Fish Transcriptome and Expression Database

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model fish

XLOC_014280 (CU207343.3)

Basic Information

Item	Value
gene id	XLOC_014280
gene name	CU207343.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	43080925 ~ 43081060 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028380
TGCAGTCTTGTCAAATTCAGTGTTTCCTCTTCAATGGACCGCACTGGCCAAAATGGCTGCAACAGTAAACAAGTAGACTTCAGGACCTACATTCACATAGAATGAATACTGGGGACATACAAGTCTGCTTACATGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000112530

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00028380	True	136	snoRNA	0.43	1	43080925	43081060

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_014279	CU207343.4	coding	upstream	3046	43077744 ~ 43077879 (+)
XLOC_014277	nkain1	coding	upstream	45738	43017628 ~ 43035187 (+)
XLOC_014276	snrnp40	coding	upstream	64530	43004408 ~ 43016395 (+)
XLOC_014275	fabp3	coding	upstream	87619	42955280 ~ 42993306 (+)
XLOC_014273	arpp21	coding	upstream	163699	42886413 ~ 42917226 (+)
XLOC_014281	eef1a1l1	coding	downstream	37954	43119014 ~ 43137740 (+)
XLOC_014282	NA	coding	downstream	169493	43250553 ~ 43251194 (+)
XLOC_014283	DGKD	coding	downstream	175926	43256986 ~ 43272332 (+)
XLOC_014284	laptm5	coding	downstream	216486	43297546 ~ 43309596 (+)
XLOC_014285	matn1	coding	downstream	233640	43314700 ~ 43338280 (+)
XLOC_014274	dre-mir-128-2	non-coding	upstream	165384	42915419 ~ 42915541 (+)
XLOC_014266	NA	non-coding	upstream	477636	42560956 ~ 42603289 (+)
XLOC_014267	NA	non-coding	upstream	507798	42565358 ~ 42573127 (+)
XLOC_014265	NA	non-coding	upstream	533721	42518577 ~ 42547204 (+)
XLOC_014291	NA	non-coding	downstream	465587	43546647 ~ 43549011 (+)
XLOC_014295	CR356238.1	non-coding	downstream	584331	43665391 ~ 43665511 (+)
XLOC_014300	NA	non-coding	downstream	705943	43787003 ~ 43791576 (+)
XLOC_014301	NA	non-coding	downstream	706082	43787142 ~ 43790716 (+)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
grasscarp (Ctenopharyngodon idella)	G230281	NA	non-coding	CI01000054	null	1308186 ~ 1311785 (-)