XLOC_014285 (matn1)


Basic Information

Item Value
gene id XLOC_014285
gene name matn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43314700 ~ 43338280 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028388
TCTCTCTCTCTGTGAATCAGTCTGTCTCTGGTTTTGGAGCAGGTCATTGGGACTCACGCCGCGCTACAGTATGACATTGCCGGGGTTTGTGATGCTGCTATGCATCTTGGGAGCTCAAGCCACTGTGGATCTGAGACAGGCTGCTGCTATGGCTGCAGGTCTGTGTAACACCAAGCCCACTGATGTGGTGTTCATCGTCGACAGCTCTCGAAGCGTCCGGCCCTCTGAGTTCGAGCAGGTTAAAGTCTTCCTGGCCAAAGTGATCGATGGTTTGAGCGTCGGGCCGGACGCCACTCGTGTGGGTGTGGTGAACTACGCCAGCAGAGTGAAGAACGAAGTCTCTCTGAAATCCCACAAAACCAAGGCTGCGCTGGTCAAGGCCGTGTCCAAGATTGAGCCGCTGTCCACTGGCACCATGACTGGACTCGCTATCCAATTTGCAATGAATGTGGCCTTCAGCGAAGCCGAGGGAGGACGCAAATCCCCTGACATCAGCAAGGTGGCCATCATTGTGACAGACGGCAGACCGCAGGACAACATCCGTGACATTGCAGCGAGAGCGCGGGAGGCCGGCATTGAGATATTTGCCATCGGAGTGGGCCGCGTTGACATGACCACCCTCAGGCAGATGGCCAGCGAGCCCCTGGAGGATCACGTAGACTACGTGGAGAGCTACAGCCTCATCGAGAAGCTCACCAAGAAGTTCCAGGAGGCCTTTTGTGCGGTTGTGTCGGACCTATGCGCGACTGGTGATCATGACTGTGAGCACATTTGCATCAGCACACCCGGATCTTTCAAGTGCGCCTGCAGAGAGGGCTTTACACTCATGAATGACAGCCGATCATGCTCAGCTTGCAGTAATGCAGCCACAGATGTGGTCTTCCTGATCGACGGCTCCAAGAGTGTGAGACCCGAGAACTTCGAGCTGGTAAAGAAATGGATCAACCTGATTATCGACAAACTGGACGTGTCAGAAACCAACACCCACGTGGGACTGGTGCAGTACTCCAGCACTGTGAAGCAGGAGTTCCCACTGGGACGCCACAACAGCAAACGATCCCTGAAAGAAGCTGTGAAAAGGATGGACTACATGGAGAGGGGAACCATGACAGGACATGCCCTCAGTTTCCTGGTGGACAACAGCTTCGGTCCTAACCAGGGCGCCAGACCAGGAGTGCCGAAAGTCGGTATTGTCTTCACAGACGGCAGGTCGCAGGACTACATCGGAGATGCCGCCAAGAAAGCCAAGGCGCTAGgctttaaaatgTATGCTGTGGGAGTCGGCAATGCAGTTGAGGATGAGCTGAGAGAGATCGCCTCTGAACCGATCGCTGACCATTACTTCTACACGGCTGACTTCAAAACCATGAACCAAATTGCCAAGAAGCTGCAAATCAACGTTTGTCAAGAGGAAGATCCCTGTGAATGTAATTCCATTACCAAGTTCCAGAAAAAGGTGGAGGAAGCACTACAGGCGTTAACAAAGAAATTGGAAGCTGTGACGAAGAGGATCGCTGCCCTGGAGAACAAGATCGTTTGAGATGGCGGCAACATCTAATCCTTACACTGCCATTCTTTTCAATACTTGTAAAAACCCAAACGCCTCCTGTGACCTCTTAAGTCTGTCTTCTCCATTGCATCTCTTTCTGCTTCTCTGCCTTCATCGCTATTGTCCATAGGGATGGAGCACTGAAAAAAGCTGAAGGTGTCGATTCTCAACCAGTCATCCCTCATAACAAAACCCTGTGTGCGTTGAGTACATAAATCCACCCATATCCACCGTCTTCACACACAAGCTGGACAATAAGGTCTTCTTTATGGGGACGTGGTGTGTAAATTAACTGAAGAAACCGCGTGTTGCCCCTGAAATATTCTTTTATATGAAGTATATATATGATGGTAATTTAATATAAAGATTGGACTTGAAATAAATGCGGGAATGCTTGATTATCCACACATACGCAGACatgccacaaacacacacacacacgggtaaACATACACCGACTATACAAATGCTAACCATACGGCTTGTGATGATTCAATAAAGTCTCGTTTTGTGTCTG
>TCONS_00028389
GCAGGTCATTGGGACTCACGCCGCGCTACAGTATGACATTGCCGGGGTTTGTGATGCTGCTATGCATCTTGGGAGCTCAAGCCACTGTGGATCTGAGACAGGCTGCTGCTATGGCTGCAGGTCTGTGTAACACCAAGCCCACTGATGTGGTGTTCATCGTCGACAGCTCTCGAAGCGTCCGGCCCTCTGAGTTCGAGCAGGTTAAAGTCTTCCTGGCCAAAGTGATCGATGGTTTGAGCGTCGGGCCGGACGCCACTCGTGTGGGTGTGGTGAACTACGCCAGCAGAGTGAAGAACGAAGTCTCTCTGAAATCCCACAAAACCAAGGCTGCGCTGGTCAAGGCCGTGTCCAAGATTGAGCCGCTGTCCACTGGCACCATGACTGGACTCGCTATCCAATTTGCAATGAATGTGGCCTTCAGCGAAGCCGAGGGAGGACGCAAATCCCCTGACATCAGCAAGGTGGCCATCATTGTGACAGACGGCAGACCGCAGGACAACATCCGTGACATTGCAGCGAGAGCGCGGGAGGCCGGCATTGAGATATTTGCCATCGGAGTGGGCCGCGTTGACATGACCACCCTCAGGCAGATGGCCAGCGAGCCCCTGGAGGATCACGTAGACTACGTGGAGAGCTACAGCCTCATCGAGAAGCTCACCAAGAAGTTCCAGGAGGCCTTTTGTGCTTGCAGTAATGCAGCCACAGATGTGGTCTTCCTGATCGACGGCTCCAAGAGTGTGAGACCCGAGAACTTCGAGCTGGTAAAGAAATGGATCAACCTGATTATCGACAAACTGGACGTGTCAGAAACCAACACCCACGTGGGACTGGTGCAGTACTCCAGCACTGTGAAGCAGGAGTTC

Function

symbol description
matn1 Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within cartilage development. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including cartilage element; head; integument; notochord; and pectoral fin. Orthologous to human MATN1 (matrilin 1).

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050307-3 Predicted to enable calcium ion binding activity. Predicted to be an extracellular matrix structural constituent. Acts upstream of or within cartilage development. Predicted to be active in collagen-containing extracellular matrix. Is expressed in several structures, including cartilage element; head; integument; notochord; and pectoral fin. Orthologous to human MATN1 (matrilin 1).

Ensembl:

ensembl_id ENSDARG00000030215

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028388 False 2066 mRNA 0.50 8 43314700 43338280
TCONS_00028389 True 863 mRNA 0.56 4 43314738 43331619

Neighbor

gene id symbol gene type direction distance location
XLOC_014284 laptm5 coding upstream 5104 43297546 ~ 43309596 (+)
XLOC_014283 DGKD coding upstream 42368 43256986 ~ 43272332 (+)
XLOC_014282 NA coding upstream 63506 43250553 ~ 43251194 (+)
XLOC_014281 eef1a1l1 coding upstream 176960 43119014 ~ 43137740 (+)
XLOC_014280 CU207343.3 coding upstream 233640 43080925 ~ 43081060 (+)
XLOC_014286 sesn2 coding downstream 2835 43341115 ~ 43357457 (+)
XLOC_014287 yrk coding downstream 20795 43359075 ~ 43432415 (+)
XLOC_014288 ahdc1 coding downstream 101121 43439401 ~ 43500299 (+)
XLOC_014289 BX649384.3 coding downstream 166200 43504480 ~ 43515396 (+)
XLOC_014290 wasf2 coding downstream 185410 43523690 ~ 43543128 (+)
XLOC_014279 CU207343.4 non-coding upstream 236821 43077744 ~ 43077879 (+)
XLOC_014274 dre-mir-128-2 non-coding upstream 399159 42915419 ~ 42915541 (+)
XLOC_014267 NA non-coding upstream 741573 42565358 ~ 42573127 (+)
XLOC_014291 NA non-coding downstream 208367 43546647 ~ 43549011 (+)
XLOC_014295 CR356238.1 non-coding downstream 327111 43665391 ~ 43665511 (+)
XLOC_014300 NA non-coding downstream 448723 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding downstream 448862 43787142 ~ 43790716 (+)
XLOC_014302 NA non-coding downstream 462552 43800832 ~ 43804410 (+)

Expression


Co-expression Network