XLOC_014297 (cap1)


Basic Information

Item Value
gene id XLOC_014297
gene name cap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43715911 ~ 43737071 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028414
GGGCGGAAACGGCGCGCAGTGACAGCTGGGAACTTCAACACGCTCATACAGGAAGAGAACGCAGACGGAGAGCCGAAACACACCCATACAACATCCCAACTAAAGCAGGACCACCGGAACATTATTCACACGGCGACGGCATGGCAGATCTGGCGGGTCTAGTGCAGCGTCTGGAGGTGGCTGTGGGCCGTCTGGAGTCCATGTCCAGTTCTGGCAGTGGAGGCGGCCCTGCTGCTGGATCTGGAGCCGTGGGAGTGTACGTTGAAGCCTATGACGGCCTGATCTCTGGTCCATTGGCTCAGTACTTTACCCTCAGTCAGAAGATAGGGGGTGACGTCCTGAAGCATGCTGAGATGATGAAGCAGGCCTTTACCAGTCAACGACAGCTGCTGGCCACTGCTTCCTGCTCTCAGAAACCCTCTGATCCTGTTCTGAATGCTCTGCTGGCCCCCGTGTCTAAAGCCATCCAGGATGTTCAGGCATTTCGAGAGAAGAACCGCTCCTCTCCTTTCTTCAACCACCTCTCTGCCGTCAGCGAAAGTGTTCCTGCTCTCGGCTGGGTTGCCATGGCCCCAAAGCCTGGCCCCTATGTGAAGGAGATGCAGGACGCAGCCATGTTTTACACAAACCGTGTGCTCAAGGATTACAAGGAGAAGGATAAGACTCATGTGGAATGGGTCAATGCTTATGTGACCATTTGGACAGAGCTGCAAGCCTACATCAAGCAGCACCACACCACTGGACTGAGCTGGAGCAAGACTggtcCCGTAGCTGCTGCTGCTGGAGGAGGAGCCCCAGCACCGCCTCCTCCAGGACCTCCTCCACCCCCAATGGACCTAAACAAGTCATCAGGTGGAGACTCCGAACCGACCAATCGAAATGCTCTCTTTGCCTCCATCAACAAAGGATCTGACATCACTAAAGGCCTGAAGCATGTGTCTGATGACCAGAAGACCCATAAGAATCCTGGGCTCAGAGGTCAGACAGGGCCTTCAGTGTCCGGTCCTAAACCCTTCACTCCACGGCCCACAGCCACCGCCAGCCCGGCCCGCTCTCTGCCCCCAGTGCTTGAGCTGGACGGCAAGAAATGGAAAGTGGAAAATCAAGAAGGCGCCCAGAATCTGGTGATCAGCGACACGGAGCTGAAACAGGTGGTTTATGGCTTTAAGTGCAACAACAGCACTTTACAGGTGAAGGGGAAGATCAACTCCATCACTCTAGATAACTGCAAGAAGATGGGGCTCGTCTTTGATGATGTTGTGGGAATTGTTGAGGTGATcaactgcagagatgttaaaatcCAGGTTATTGGTAAAGTGCCAACCATCTCCATCAACAAGACCGATGGCTGCCACGTGTACCTGAGCAAAGACTCCCTGTCGTGTGAAATCGTCAGCGCCAAGAGCTCCGAGATGAACGTTCTGGTGCCCAACAAAGATGGAGAATTCACTGAGATCCCAGTCCCTGAACAGTTCAAAACCGTATGGGATGGCAGTAAACTGGTCACCACAGCCACCGAGATCGCTGGATAAAGAGCCGCTGTGTGAACCCCCACCCCCTCCCATGCAGTGTCCAACCTGACTGACCGACCAGCTTAAACTACACTGTACAAGTCCATGCCAACAGGTCAACTCTCCGAGTAGCCAATCACAGCGGCTACAGCAGGCTGAACGCTCTCTCCATTCAAACATTAGCACTTGAAAACCAATGCCAACCGTTGACGTGTTTTCATATGTTCGTTTTGATGTCTTGCAgccataataaacaaaataacatgtGAACGGCCAA
>TCONS_00028415
CGCAGACGGAGAGCCGAAACACACCCATACAACATCCCAACTAAAGCAGGACCACCGGAACATTATTCACACGGCGACGGCATGGCAGATCTGGCGGGTCTAGTGCAGCGTCTGGAGGTGGCTGTGGGCCGTCTGGAGTCCATGTCCAGTTCTGGCAGTGGAGGCGGCCCTGCTGCTGGATCTGGAGCCGTGGGAGTGTACGTTGAAGCCTATGACGGCCTGATCTCTGGTCCATTGGCTCAGTACTTTACCCTCAGTCAGAAGATAGGGGGTGACGTCCTGAAGCATGTACGTAATGCGATGTGATTATTGTTTCTGATCACTGGTTTGCATTGATAACGAGTGCACTCAGAGTCTTTGCTTCTGTGTTATAGGCTGAGATGATGAAGCAGGCCTTTACCAGTCAACGACAGCTGCTGGCCACTGCTTCCTGCTCTCAGAAACCCTCTGAT
>TCONS_00028416
GGGCGGGCGTCAAGTGCAGGAAATCCAAACACAAGCTCGTCGTGGACGATATATTGCTTccgttttcagGCATGGCAGATCTGGCGGGTCTAGTGCAGCGTCTGGAGGTGGCTGTGGGCCGTCTGGAGTCCATGTCCAGTTCTGGCAGTGGAGGCGGCCCTGCTGCTGGATCTGGAGCCGTGGGAGTGTACGTTGAAGCCTATGACGGCCTGATCTCTGGTCCATTGGCTCAGTACTTTACCCTCAGTCAGAAGATAGGGGGTGACGTCCTGAAGCATGCTGAGATGATGAAGCAGGCCTTTACCAGTCAACGACAGCTGCTGGCCACTGCTTCCTGCTCTCAGAAACCCTCTGATCCTGTTCTGAATGCTCTGCTGGCCCCCGTGTCTAAAGCCATCCAGGATGTTCAGGCATTTCGAGAGAAGAACCGCTCCTCTCCTTTCTTCAACCACCTCTCTGCCGTCAGCGAAAGTGTTCCTGCTCTCGGCTGGGTTGCCATGGCCCCAAAGCCTGGCCCCTATGTGAAGGAGATGCAGGACGCAGCCATGTTTTACACAAACCGTGTGCTCAAGGATTACAAGGAGAAGGATAAGACTCATGTGGAATGGGTCAATGCTTATGTGACCATTTGGACAGAGCTGCAAGCCTACATCAAGCAGCACCACACCACTGGACTGAGCTGGAGCAAGACT

Function

symbol description
cap1 Predicted to enable actin monomer binding activity and adenylate cyclase binding activity. Acts upstream of or within mesodermal cell migration and somitogenesis. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in adaxial cell; ectoderm; heart; segmental plate; and skeletal muscle. Orthologous to human CAP1 (cyclase associated actin cytoskeleton regulatory protein 1).

GO:

id name namespace
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:0045761 regulation of adenylate cyclase activity biological_process
GO:0001756 somitogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0008179 adenylate cyclase binding molecular_function
GO:0003779 actin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6459 Predicted to enable actin monomer binding activity and adenylate cyclase binding activity. Acts upstream of or within mesodermal cell migration and somitogenesis. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm. Is expressed in adaxial cell; ectoderm; heart; segmental plate; and skeletal muscle. Orthologous to human CAP1 (cyclase associated actin cytoskeleton regulatory protein 1).

Ensembl:

ensembl_id ENSDARG00000016350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028414 False 1788 mRNA 0.53 13 43715911 43737071
TCONS_00028415 False 452 lncRNA 0.54 3 43715970 43724855
TCONS_00028416 True 692 mRNA 0.55 7 43716607 43726697

Neighbor

gene id symbol gene type direction distance location
XLOC_014296 si:ch211-193k19.1 coding upstream 8650 43669122 ~ 43707261 (+)
XLOC_014295 CR356238.1 coding upstream 50400 43665391 ~ 43665511 (+)
XLOC_014294 si:ch211-199g17.9 coding upstream 104031 43604256 ~ 43611880 (+)
XLOC_014293 si:ch211-199g17.2 coding upstream 111979 43579786 ~ 43603932 (+)
XLOC_014292 cd164l2 coding upstream 143613 43563179 ~ 43572298 (+)
XLOC_014298 si:ch1073-513e17.1 coding downstream 13605 43750676 ~ 43768721 (+)
XLOC_014299 rpl11 coding downstream 43899 43780970 ~ 43786940 (+)
XLOC_014300 NA coding downstream 49932 43787003 ~ 43791576 (+)
XLOC_014301 NA coding downstream 50071 43787142 ~ 43790716 (+)
XLOC_014302 NA coding downstream 63761 43800832 ~ 43804410 (+)
XLOC_014291 NA non-coding upstream 166900 43546647 ~ 43549011 (+)
XLOC_014282 NA non-coding upstream 464717 43250553 ~ 43251194 (+)
XLOC_014280 CU207343.3 non-coding upstream 634851 43080925 ~ 43081060 (+)
XLOC_014279 CU207343.4 non-coding upstream 638032 43077744 ~ 43077879 (+)
XLOC_014314 NA non-coding downstream 1180028 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1622206 45359277 ~ 45365727 (+)

Expression


Co-expression Network