XLOC_014298 (si:ch1073-513e17.1)


Basic Information

Item Value
gene id XLOC_014298
gene name si:ch1073-513e17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43750676 ~ 43768721 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028417
ACACGTAAACTATCTGAAAAGCCGGGACAGTAGTGATGATTCCCGGTATATTTAACATCAGTAAAGTAAATTAAAACGTTCTAAAGGTCATGAAGGAGTCGAAAACAAGTCATCATCTTTGTGAAGCATCCAGCGATTATCCACAAGTAGTAACATCTGTCTGTGAAGCATCTTGATGTGCACAATTCCATGAAGCTGCTACAAGAGGTTTGGACATCCCAGTAGATGCAGATAGTCTAAGATTTGTGGATGTCATATTTCAGCTAATTCATGTTCAGTCCATAAACGTAAAGCTTAATCTATGCAATCATGGCACTAGAAGACGGTTACTCCATCAACACAACTGAAGATGACCAGGACAGTGACACAGCACCGCTTCTTGAAAAAGAAGTGCAAGAAATCAAAGtGCCTCCTAAATGCTGCTCTGTACGCTGCAATCTGGCTGTTATGATGTTCTTTGGCTTTGCTGTGGTTTATGGGCTGCGTGTAAACCTCAGTGTTGCCATGGTTGCAATGGTTAATGGGACCAATGACCAGCCATCATCTAATAGCAGTATATCAAATGAGTGTCCAGCACCGTCCCCTGCGCATAACAACAACAGCCAAAGCTCAGAACAGCCAGAAGGGATTCCGAGATACCCGTGGAATTCAGAGACACAGGGAATGCTTCTTGGTGCTTTCTTTTTTGGATACCTGTTTACTCAGATCCCAGGAGGTTATTTATCAGGTCGCTTTGGAGGAAGCCTGTTTCTGGGTGGAGGTGTGCTGGGAACGGCTCTCCTCACGCTCCTCACCCCGCTGTCAGCTCAACTCGGAGCTAAGTGGCTGTTTGCCCTGCGTGCACTGGAGGGTTTCGGGGAGGGTGTGACTTTTCCTGCCATGATGGCGATGTGGGCACGCTGGGCTCCTCCACTGGAAAGGGCTCGTCTGATGACGTTCTCTGGTGCCGGCTCTAGTTTTGGTGCATTTGTGGCTCTTCCTCTCACTGGCTTCATCTGCCATAGTCTGGGCTGGCCTGCAGTCTTCTACTCCTGTGGTGGTGCTGGGTGCCTGTGGGCAGTGTTCTGGTTTATCCTGGTGTCAGATGAACCCCGAACTCACCCCAGAATTACAGTCCAAGAGAAAGATTACATAATTAACTCATTAGGTCAACAGG
>TCONS_00028418
ATGGCACTAGAAGACGGTTACTCCATCAACACAACTGAAGATGACCAGGACAGTGACACAGCACCGCTTCTTGAAAAAGAAGTGCAAGAAATCAAAGtGCCTCCTAAATGCTGCTCTGTACGCTGCAATCTGGCTGTTATGATGTTCTTTGGCTTTGCTGTGGTTTATGGGCTGCGTGTAAACCTCAGTGTTGCCATGGTTGCAATGGTTAATGGGACCAATGACCAGCCATCATCTAATAGCAGTATATCAAATGAGTGTCCAGCACCGTCCCCTGCGCATAACAACAACAGCCAAAAGACACAGGGAATGCTTCTTGGTGCTTTCTTTTTTGGATACCTGTTTACTCAGATCCCAGGAGGTTATTTATCAGGTCGCTTTGGAGGAAGCCTGTTTCTGGGTGGAGGTGTGCTGGGAACGGCTCTCCTCACGCTCCTCACCCCGCTGTCAGCTCAACTCGGAGCTAAGTGGCTGTTTGCCCTGCGTGCACTGGAGGGTTTCGGGGAGGGTGTGACTTTTCCTGCCATGATGGCGATGTGGGCACGCTGGGCTCCTCCACTGGAAAGGGCTCGTCTGATGACGTTCTCTGGTGCCGGCTCTAGTTTTGGTGCATTTGTGGCTCTTCCTCTCACTGGCTTCATCTGCCATAGTCTGGGCTGGCCTGCAGTCTTCTACTCCTGTGGTGGTGCTGGGTGCCTGTGGGCAGTGTTCTGGTTTATCCTGGTGTCAGATGAACCCCGAACTCACCCCAGAATTACAGTCCAAGAGAAAGATTACATAATTAACTCATTAGGTCAACAGGGGACTGCTCATGGTTGGTCAGTGCCCGTATGGTCTATGCTGTTCTCTATGCCCCTGTGGGCCATAATCATCCCTCAGATGTGCTCCAACTGGTCTTATTACACTCTCCTCACCTCTCTGCCCATCTACATGGACACCGTGCTCCACTTTGATTTGAGACAGAATTCGTTCCTCTCCGCTCTGCCGTATCTGGCTGGTTGGCTGTTTTCTGTGGGTTCAGGAGTGCTGGCTGATAACCTGCTGGAGAAGGAGATCCTGAGTGTCACAGCCGTACGCAAAATCTTCACTTTCATTGGTCTCTTTCTGCCTGCTGCTTTCCTGCTGGCTGTGGGCTTCTCAGGGTGTAGTGGTGTTCTGGCTGTGACTTTTCTGACTTTATCAAGTGCGTTTGGCGGATTCAGTGCTGCTGGTGTGTTCATTAACCAGATTGACATCGCTCCACGGTATGCAGGAATGCTTCTAGGAATCACAAACACTTTTGGGACCATTCCTGGTGTGCTTGCTCCAATCGTACACTCAGTTTCCGGCTGGAGGAATGTGTTCTGGTTGTCGGCTGGAGTGAGTGCATTCGGAGCCATCTTTTATGTGATCTTTGGCACTGGGAAGATTCAGAGCTGGGCAAGAACAGATGAGGAATCAGACACAGATGAACACGATTAA

Function

symbol description
si:ch1073-513e17.1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7188 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000086739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028417 False 1156 mRNA 0.48 7 43750676 43760606
TCONS_00028418 True 1461 mRNA 0.51 10 43753995 43768721

Neighbor

gene id symbol gene type direction distance location
XLOC_014297 cap1 coding upstream 13605 43715911 ~ 43737071 (+)
XLOC_014296 si:ch211-193k19.1 coding upstream 43415 43669122 ~ 43707261 (+)
XLOC_014295 CR356238.1 coding upstream 85165 43665391 ~ 43665511 (+)
XLOC_014294 si:ch211-199g17.9 coding upstream 138796 43604256 ~ 43611880 (+)
XLOC_014293 si:ch211-199g17.2 coding upstream 146744 43579786 ~ 43603932 (+)
XLOC_014299 rpl11 coding downstream 12249 43780970 ~ 43786940 (+)
XLOC_014300 NA coding downstream 18282 43787003 ~ 43791576 (+)
XLOC_014301 NA coding downstream 18421 43787142 ~ 43790716 (+)
XLOC_014302 NA coding downstream 32111 43800832 ~ 43804410 (+)
XLOC_014303 eloa coding downstream 54247 43822968 ~ 43833995 (+)
XLOC_014291 NA non-coding upstream 201665 43546647 ~ 43549011 (+)
XLOC_014282 NA non-coding upstream 499482 43250553 ~ 43251194 (+)
XLOC_014280 CU207343.3 non-coding upstream 669616 43080925 ~ 43081060 (+)
XLOC_014279 CU207343.4 non-coding upstream 672797 43077744 ~ 43077879 (+)
XLOC_014314 NA non-coding downstream 1148378 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1590556 45359277 ~ 45365727 (+)

Expression


Co-expression Network