XLOC_014299 (rpl11)


Basic Information

Item Value
gene id XLOC_014299
gene name rpl11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43780970 ~ 43786940 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028419
GTTCTCTTCTAGTGATCAAACATGGCGGACCAGAGCGAGAAGAAGGAGAACCCCATGAGGGAGCTGCGCATCCGCAAACTGTGCCTGAACATCTGTGTGGGTGAGAGCGGTGACAGACTGACCAGAGCTGCTAAAGTGCTGGAGCAGCTGACAGGACAGACTCCAGTCTTCTCCAAGGCCCGCTACACTGTGCGATCCTTCGGTATTCGTAGAAATGAAAAGATTGCAGTCCACTGCACTGTTCGAGGAGCCAAGGCTGAGGAAATCCTGGAGAAGGGATTGAAGGTGCGCGAGTACGAGTTGAGAAAGAACAACTTCTCAGACACCGGAAACTTTGGCTTTGGTATCCAGGAACACATCGATTTGGGCATCAAGTACGACCCAAGCATTGGAATCTACGGATTGGACTTCTACGTGGTTCTTGGCAGACCCGGGTTCAGCATTGCTGACAAAAAGAGGAAGACAGGCCGCATCGGCGCTAAACACCGCATCCGCAAGGAGGAGGCCATGCGCTGGTTCCAGCAGAAGTATGACGGCATCATCCTCCCTGGCAAGTAAAGGACCACCATTTTTTGAATttgtatcaaaaaaataaaaagaaacaaaatgcc

Function

symbol description
rpl11 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including erythrocyte development; glucose homeostasis; and hemoglobin biosynthetic process. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045088 regulation of innate immune response biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0006915 apoptotic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0042593 glucose homeostasis biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040625-147 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within several processes, including erythrocyte development; glucose homeostasis; and hemoglobin biosynthetic process. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; eye; intestine; liver; and pancreas. Used to study Diamond-Blackfan anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11).

Ensembl:

ensembl_id ENSDARG00000043509

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028419 True 611 mRNA 0.51 6 43780970 43786940

Neighbor

gene id symbol gene type direction distance location
XLOC_014298 si:ch1073-513e17.1 coding upstream 12249 43750676 ~ 43768721 (+)
XLOC_014297 cap1 coding upstream 43899 43715911 ~ 43737071 (+)
XLOC_014296 si:ch211-193k19.1 coding upstream 73709 43669122 ~ 43707261 (+)
XLOC_014295 CR356238.1 coding upstream 115459 43665391 ~ 43665511 (+)
XLOC_014294 si:ch211-199g17.9 coding upstream 169090 43604256 ~ 43611880 (+)
XLOC_014300 NA coding downstream 63 43787003 ~ 43791576 (+)
XLOC_014301 NA coding downstream 202 43787142 ~ 43790716 (+)
XLOC_014302 NA coding downstream 13892 43800832 ~ 43804410 (+)
XLOC_014303 eloa coding downstream 36028 43822968 ~ 43833995 (+)
XLOC_014304 pithd1 coding downstream 91109 43878049 ~ 43880951 (+)
XLOC_014291 NA non-coding upstream 231959 43546647 ~ 43549011 (+)
XLOC_014282 NA non-coding upstream 529776 43250553 ~ 43251194 (+)
XLOC_014280 CU207343.3 non-coding upstream 699910 43080925 ~ 43081060 (+)
XLOC_014279 CU207343.4 non-coding upstream 703091 43077744 ~ 43077879 (+)
XLOC_014314 NA non-coding downstream 1130159 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1572337 45359277 ~ 45365727 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01075562_00000295_00000925 RL11, RPL11.L, RPL11 coding CI01075562 null 295 ~ 925 (-)
bowfin (Amia calva) AMCG00011131 rpl11,LOC106570028,LOC107589447,LOC107591640 coding CM030133.1 CM030133.1 11948240 ~ 11951000 (-)