XLOC_014302



Basic Information


Item Value
gene id XLOC_014302
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43800832 ~ 43804410 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00030043
CCAAAATTTCCTACTACCACTGTCCTAAGATTTTGTGCTCTTCTTTCCACTAACCTGAAACGTGGAGACCTCTGAAGGAAGAATAAGGTTGTCATCCTGCAGGAAAGCTGTGATCTGCTCAAAGGTCTTACCGAGAGGCGAGAGGGTAGGGAGCTCTAGTCGCTTGAGTCCAGGATCTTTGGCCAGGACTTCTCGCAGATACTGACTGACTGAGGAGATGACAAGTTTGTGAACATCGAACGCTTTGGTTTTACAGGCCAGCTCCATGTCAGTGAGGAAGCGTTCCTGTCTCATGCGGCTCAGCTCCTCCAGCAGGGCAGATCCATGCAGAGGCCTGGTGAGCTCAGTGCCCAGTCCAAAACCCTTCTCCCCTGGCCGGATCACCGGCGGGGGTAGCGGCACCCCATTCAGACGGTTCAGCTGCTCCACATTCAGAGGGAGCTCCAGCTTTTTTACATTGGGCTCCGGGACAAGCACTCCACTCTCAACTGTTGTCACTTCAGGAATAGCCTTCTTAGGGCGTGCTGACTTCTTTTTGGGAGCCATCGTGATGTGTAGCCTGCTTAGATGAATATAACATGTGCTTAGATGCTTTTTCTATTAGGTcagattaactttttttaaaactgatAGATTCAATGTGGTTTTTAAaggtttggtcacactttatttcaaCTCTTGTACAAATTTACTATCCATTCATtatgtttgtggatgtttttgccccattaacttcattataatgacatttttacgctcttgattgttggtggtatTCCCTGTTGGGAGGAGgtaacatttgtcatttttactgttgatcatcagttggcaccattaaccttttagataggcctgtggGAAGGTTTAAGGCTTTTATATGAAGTTCTATTGAATAAAACAGCAGATATGCTCTCTGCAGCTTTCACAATCACATGGTCGACaactgaagctaaacagggctgtgcctggtcagtacctgaatgggagaccacatgggaaagctaggttgctgccggaaggagatatatccagctgcaggcccgcagaaccgcacacaatctaggacacacgatttaggcaaaccatatatggtaactaactTTTTAGCATgatcgccacctattgaatttcacaagtatggtttcccatttcagtcatcattattattattgtatcgtaacgatcattttaacatctctgcagtttctgaacttaaattatgtaaataaaaataattggttaaagac
>TCONS_00030044
GTACAGAGACATGTGCACACGGCCCAGGTCTTACCGAGAGGCGAGAGGGTAGGGAGCTCTAGTCGCTTGAGTCCAGGATCTTTGGCCAGGACTTCTCGCAGATACTGACTGACTGAGGAGATGACAAGTTTGTGAACATCGAACGCTTTGGTTTTACAGGCCAGCTCCATGTCAGTGAGGAAGCGTTCCTGTCTCATGCGGCTCAGCTCCTCCAGCAGGGCAGATCCATGCAGAGGCCTGGTGAGCTCAGTGCCCAGTCCAAAACCCTTCTCCCCTGGCCGGATCACCGGCGGGGGTAGCGGCACCCCATTCAGACGGTTCAGCTGCTCCACATTCAGAGGGAGCTCCAGCTTTTTTACATTGGGCTCCGGGACAAGCACTCCACTCTCAACTGTTGTCACTTCAGGAATAGCCTTCTTAGGGCGTGCTGACTTCTTTTTGGGAGCCATCGTGATGTGTAGCCTGCTTAGATGAATATAACATGTGCTTAGATGCTTTTTCTATTAGGTcagattaactttttttaaaactgatAGATTCAATGTGGTTTTTAAaggtttggtcacactttatttcaaCTCTTGTACAAATTTACTATCCATTCATtatgtttgtggatgtttttgccccattaacttcattataatgacatttttacgctcttgattgttggtggtatTCCCTGTTGGGAGGAGgtaacatttgtcatttttactgttgatcatcagttggcaccattaaccttttagataggcctgtggGAAGGTTTAAGGCTTTTATATGAAGTTCTATTGAATAAAACAGCAGATATGCTCTCTGCAGCTTTCACAATCACATGGTCGACaactgaagctaaacagggctgtgcctggtcagtacctgaatgggagaccacatgggaaagctaggttgctgccggaaggagatatatccagctgcaggcccgcagaaccgcacacaatctaggacacacgatttaggcaaaccatatatggtaactaactTTTTAGCATgatcgccacctattgaatttcacaagtatggtttcccatttcagtcatcattattattattgtatcgtaacgatcattttaacatctctgcagtttctgaacttaaattatgtaaataaaaataattggttaaagac

Function


GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0006364 rRNA processing biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0000154 rRNA modification biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0070475 rRNA base methylation biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00030043 False 1247 lncRNA 0.44 2 43800832 43804410
TCONS_00030044 True 1150 lncRNA 0.44 2 43801177 43804410

Neighbor


gene id symbol gene type direction distance location
XLOC_014300 NA coding upstream 9256 43787003 ~ 43791576 (+)
XLOC_014301 NA coding upstream 10116 43787142 ~ 43790716 (+)
XLOC_014299 rpl11 coding upstream 13892 43780970 ~ 43786940 (+)
XLOC_014298 si:ch1073-513e17.1 coding upstream 32111 43750676 ~ 43768721 (+)
XLOC_014297 cap1 coding upstream 63761 43715911 ~ 43737071 (+)
XLOC_014303 eloa coding downstream 18558 43822968 ~ 43833995 (+)
XLOC_014304 pithd1 coding downstream 73639 43878049 ~ 43880951 (+)
XLOC_014305 lypla2 coding downstream 79710 43884120 ~ 43901467 (+)
XLOC_014306 ankib1a coding downstream 101261 43905671 ~ 43960753 (+)
XLOC_014307 gatad1 coding downstream 164953 43969363 ~ 43976522 (+)
XLOC_014295 CR356238.1 non-coding upstream 135321 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 251821 43546647 ~ 43549011 (+)
XLOC_014282 NA non-coding upstream 549638 43250553 ~ 43251194 (+)
XLOC_014314 NA non-coding downstream 1112689 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1554867 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 non-coding downstream 1704455 45508865 ~ 45508981 (+)
XLOC_014317 NA non-coding downstream 1922804 45727214 ~ 45728062 (+)
XLOC_014321 NA non-coding downstream 2286907 46091317 ~ 46093652 (+)

Expression



Co-expression Network