XLOC_014303 (eloa)


Basic Information

Item Value
gene id XLOC_014303
gene name eloa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43822968 ~ 43833995 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028420
GGAGTCTCCATTTGGAGAGACGGAAGTTCGCAGTAGTCTGAAACAACAGCAGGCCCCCACCGCTGCTGCTGCGGCTTCCGGGCAACATGTACCAGCTGTAAACATGGCGGAGGAGATACTGGAAGCAGTCGAGAAGTTGCAGTTAAGGCTCGGAGACAATCAAGAGCCTCGCAAGCTTCTGAAAACTCTGAAGAGGCTGGGGGAGCTTCCTATGACGGTAGACATTCTGGTGGAAACAGGCATTGGAAAAACTGTGAATTCTTTGCGCAAGCATGAATATGCTGGTGAGGCAGCGAAGAACCTTGTGGCAAAGTGGAAAAAGCTGGTGCCAGAGAAATCTGCAGACAGACCAAGTGTAAAAGATGGACGTTCCCACTCGCGCATCAGTGAGTCTGCCGGCCACAGACGGGTCCGGGAACGCTCTCCAGTGGAGCCTCCTCTTATGGAGGAGGAACAACATGAAGAAATGGGCTACCAACATGGCTACTCGCCGTCTCCTCCACAGTACAGACACAGCAGCGCTCCGCAGTATCAGTCAGATGAATACGAAAGCCCTCCGGAGGACGAGCCGGAGCCCAGTCCTCCACCAAATAACATTCGGCACAGCAAGCCACACAAAGAGCCAGTCAGAGAGCACAATTCCCAGGACCTGCGGGATCAGGAGAGACGAAAACAGAGGCCCGGGGGCGAGGAGAGGACTAACCGAGCGGACAGGGAACAACAGGGCGGGACGAGTCACAGATCTAAACACGATCGGCTTTTAAGCTCACATGAGGGCAAGAGGGAGAAGAAAGGGGGAAGTGATGGAAAATCAAGAGAGAGGAGGGAAGTTCCAGGGCCAGTGGATGAGGATGAAGAGCCTTATGAGGCTCCGACCATGTCTTTTGAATCCTTTCTTACATATGACGCTCCCACCCCAACTAAAAAGAAAAAGCAGCCCTCCCGACCCCCTCAGCCCCCTGCCCCGCTTCCTTCTGCTTCCTCCTCCAAGTCCAGCAAAGCCAACGGGACCAGCAGTAAACGCTCAAAGCCATCCTCATCCTCTTCCTCAGTGACCACACCTGCTGTTCCAGAGAAACGCAAGAAGGTTGTGGATGTGGTTCCCACACTTCCTGATATCCCTTTGCCAGCTATTCAGCCCTTCTACAGACCACTGCCCTCCATTGACCTCACGCCACTCTCCCCCCAGAGACGCAAAGtTCCAGTGTCAAATGAGGAAGAGGATGGTGGCTACACAGGGCGACGGCTGAACTCTAAAATGGTGGTGTACTCCGGGTCCAAGACTGCATATTTGCCCAAAATGATGTCCCTGTATGAGCAGTGCATTAGAGTCCTGCAGAACAACATCGACT
>TCONS_00028421
TTAAGCTCACATGAGGGCAAGAGGGAGAAGAAAGGGGGAAGTGATGGAAAATCAAGAGAGAGGAGGGAAGTTCCAGGGCCAGTGGATGAGGATGAAGAGCCTTATGAGGCTCCGACCATGTCTTTTGAATCCTTTCTTACATATGACGCTCCCACCCCAACTAAAAAGAAAAAGCAGCCCTCCCGACCCCCTCAGCCCCCTGCCCCGCTTCCTTCTGCTTCCTCCTCCAAGTCCAGCAAAGCCAACGGGACCAGCAGTAAACGCTCAAAGCCATCCTCATCCTCTTCCTCAGTGACCACACCTGCTGTTCCAGAGAAACGCAAGAAGGTTGTGGATGTGGTTCCCACACTTCCTGATATCCCTTTGCCAGCTATTCAGCCCTTCTACAGACCACTGCCCTCCATTGACCTCACGCCACTCTCCCCCCAGAGACGCAAAGtTCCAGTGTCAAATGAGGAAGAGGATGGTGGCTACACAGGGCGACGGCTGAACTCTAAAATGGTGGTGTACTCCGGGTCCAAGACTGCATATTTGCCCAAAATGATGTCCCTGTATGAGCAGTGCATTAGAGTCCTGCAGAACAACATCGACT

Function

symbol description
eloa Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of elongin complex. Orthologous to human ELOA (elongin A).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0070449 elongin complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2810 Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of elongin complex. Orthologous to human ELOA (elongin A).

Ensembl:

ensembl_id ENSDARG00000102365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028420 False 1352 mRNA 0.54 7 43822968 43833995
TCONS_00028421 True 592 mRNA 0.52 4 43828104 43833995

Neighbor

gene id symbol gene type direction distance location
XLOC_014302 NA coding upstream 18558 43800832 ~ 43804410 (+)
XLOC_014300 NA coding upstream 31392 43787003 ~ 43791576 (+)
XLOC_014301 NA coding upstream 32252 43787142 ~ 43790716 (+)
XLOC_014299 rpl11 coding upstream 36028 43780970 ~ 43786940 (+)
XLOC_014298 si:ch1073-513e17.1 coding upstream 54247 43750676 ~ 43768721 (+)
XLOC_014304 pithd1 coding downstream 44054 43878049 ~ 43880951 (+)
XLOC_014305 lypla2 coding downstream 50125 43884120 ~ 43901467 (+)
XLOC_014306 ankib1a coding downstream 71676 43905671 ~ 43960753 (+)
XLOC_014307 gatad1 coding downstream 135368 43969363 ~ 43976522 (+)
XLOC_014308 nkd3 coding downstream 144819 43978814 ~ 43980876 (+)
XLOC_014295 CR356238.1 non-coding upstream 157457 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 273957 43546647 ~ 43549011 (+)
XLOC_014314 NA non-coding downstream 1083104 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1525282 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 non-coding downstream 1674870 45508865 ~ 45508981 (+)
XLOC_014317 NA non-coding downstream 1893219 45727214 ~ 45728062 (+)
XLOC_014321 NA non-coding downstream 2257322 46091317 ~ 46093652 (+)

Expression


Co-expression Network