XLOC_014305 (lypla2)


Basic Information

Item Value
gene id XLOC_014305
gene name lypla2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43884120 ~ 43901467 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028423
TGGACGAGCGCGATGGCGTCATGACGCAAGTCTCCGCCTCTCCTGCTGAAGGAGCGGAAGTTCCGTTGTGACCTGGGATAGCAAGCGCATCTCCTCACATTGTATGTGTGGCAACAACATGTCTGTACCCCTGCTCGCTGAAGCCGTGACGGTGCCTGGGACGGAGAAGGAGACGGCTGTGGTGATCTTCCTTCATGGCTTGGGCGATACAGGACACGGCTGGGCTGATGCCATGACATCGATTCGACTGCCGTACATCAAATACATCTGCCCACATGCgcCCAGAATCCCTGTAACGCTCAACTTGAAGATGACCATGCCGTCATGgTTTGATCTGATGGGCTTAAGCCCGGAATCACCGGAGGATGAAGCAGGGATTAAGAGAGCAGCAGAGAACATAAAAGCCATCATCGATCACGAGGTAAAGAACGGTATACCATCCAATCGTATTGTCCTCGGGGGCTTCTCTCAGGGTGGAGCTCTGTCTCTCTACACCGCTCTGACCTCTCAGCAGCAGCTCGCTGGCGTCGTCGGACTCAGCTGTTGGCTTCCCCTTCATAAGACTTTCCCACAGGCTGCAGGTGCGAGTGCAAACAAGGACACTCCCATTCTTCAGTGTCACGGTGAGATGGATCCCATGATCCCGGTGCAGTTTGGGGCCATGACAGCAGAGAAGCTCAAGACCATTGTGTCTCCAGAGAATATCACCTTCCGCACCTACCCGGGTCTCATGCACAGCTCCTGTCCTCAGGAGATGTCTGCTGTGAAGGACTTCATTGAAAAGCAGTTGCCCCGAGTCTGACCTCATTCTAACTCACTGTGACCCTTAGACACTGACCTCTCACCTCCGACCGGCCATTCTCCCACAGGAAACAGCCATGATCCCCctgcaaaccacacacacacatacatgcgcgTCAGTTGTACATACTGTGAACATGCATCACATGCATACCCTATCATCTCATCTCACGCCTTTTGTTTTTGATCTCATTCATCAGTAGACGTTTATTGAAttaaaatcttattattattatttggtttcAATGCACACTTTAACATCAtgaaattattcttattattatttttatttttaagggagATTCTTCATTTTACATTCCTGTAAGCATTAAATCTTAAAATGTTTCCCTGTATCTCTCTCTTTTtccaaaatttcttttttttcttcataagcAATGCAGGTAAGATTTTACTAGATGGGAGATGTGCGGTGCGTCTGGAGTGATCTCCATCACGTGACGCTGCTCTGCATGCTTTCACCggtcagtgtatcttttggtcattggattttcattttagaaaccgATAATgaaaaaggtaatgattcacgAAGAACATCAAGTAGTTGCTTCGTAccgtttttctttttaaagtctTCAGgtgatttaaaaacacaaatgttaCAGCACAATGCCTGCCTCAGTGTGTGATACAATCCTCTAACTCCACCCCTTTATTCTATAGTCAATCACAATGCGTCATTAGTTAGACGGCCactctcattttcatttaaatatttcatgATTAACCACATAAGGACTATTTACCTTCAGAAACGGgtattgaaaaattaaaaatgagtCGTTTTTTGATTTTCGTTATAAAATTAAAAGTCGAAAATTGAAATTTattgcgtttttttttattttcgttttttttttttttttttaagatttatttttggcctttttgccttttttaagtggataggacagtattccagacaggaagcgaagtgggagagagaggggggtTAGGGACaggaaatgtcctcaagccggGTTTCGAACTCGGGACACCCTGAAGTGCTACAGCACCATATGTCGACTCGCTAACGACTTGATTTTCGAATGGTTTtgaattttgaaataaaaatataaaaaatgactcGTTTTTCGTTCTTATGGTGAAAAGCAAAAcgcaaaaaattatttgtttgaatttttttttatttcaaattacaaaaaataaaatcatgagaaaacaaaaatgaatgaagaattttttttttagattccgAAACCAGATAGGCCGACTCATTTACGGCGACGCAATGCTGCCACACACAGGCTAGCCTACTATAGGCTATTATTTATTTCCACTTAATATCGTTATAAAAGGTATGTTCTTTATTTTGTCAAGACATATTTTCCCTTATTAAGACAAGGCATTTCTCATATAAGGGTCGGTTATaggctatatatttattttttgttaggaTGTTTTAAATGAAACAACCTTTATTTTGACATTACATGCAAGCGCTAGGTTGCTTTACTAAACACTTTAAcagttttaatattgttaaaaccATAATACTTCCACTTCCCGAAGTTTTACcatgaatacttttttttttacgtttgagAGAGGCATTAATACAGTTGTTCGTTACGCACATTTCAATAATTTCATGAATTAAAATGAAGAATTTTATCTGAAAGGAGGCATGCTGCACAAACACCCTGGTAAGGATCCCGTGTCTTTCAAAAGCGGACTATCGCTAAGCTTGCCGTTGTGTGCATGCATCATCACCCCTCTACAGGGGATCTATCCATAAGTTTAATATTTAACACGGAGAGATGAGCAATGATTCCAAACGAATGCTCAATGTTACTGTCACTTCTGAAGTGGAAGTGATTTTTAACAGTaaactttattttcagaaaactgTTCAGCACTGCAAATACTACATCAGTTATGTTGTTCCATATAACCGGCTTcaatgaggaaaatatgtcttgaCAAAATCccgttataataaaaaaataccttCTATAACGATATTAAGTGGAAATATATAATAGCCTATACTAGGCTAGCCTGTGTGTGGCAGCATTGTGCACCGTGAAAGAGTGTATCTGGTttggaatataaaaaaaataaggtctttatttgtttttgttttctggtgcttttattttttgttaatcgaaataaaaatctaataatttttgaatttagtttttctgtttttcaccattaaaaaaaagcctttttttatatttacgctttaaaattctaaaacaaaaatcaaaaaacgCATCGAGTATAAATGttcgtttttttaattttaaaacaaaaatcaagttAGTTTTTCAATATCTtaaactaatataatatattagtttttcattttagtttttcaatatccgtttctaaaatgaaaattcaatgaccaaaagatacactgaccGACCTTTTACCTACGTTGCATGTCGGCCCTGGGCCTTCATCCAGATGCTGCAACTCATACTTGTGCTTTTTGTTTACTAGAAATACGAGAAAGGCAAGCAAAGGCTCTAATAAACTAAGCAAATTGAAA
>TCONS_00028424
CGTTGTGACCTGGGATAGCAAGCGCATCTCCTCACATTGTATGTGTGGCAACAACATGTCTGTACCCCTGCTCGCTGAAGCCGTGACGGTGCCTGGGACGGAGAAGGAGACGGCTGTGGTGATCTTCCTTCATGGCTTGGGCGATACAGGACACGGCTGGGCTGATGCCATGACATCGATTCGACTGCCGTACATCAAATACATCTGCCCACATGCgcCCAGAATCCCTGTAACGCTCAACTTGAAGATGACCATGCCGTCATGgTTTGATCTGATGGGCTTAAGCCCGGAATCACCGGAGGATGAAGCAGGGATTAAGAGAGCAGCAGAGAACATAAAAGCCATCATCGATCACGAGGTAAAGAACGGTATACCATCCAATCGTATTGTCCTCGGGGGCTTCTCTCAGGGTGGAGCTCTGTCTCTCTACACCGCTCTGACCTCTCAGCAGCAGCTCGCTGGCGTCGTCGGACTCAGCTGTTGGCTTCCCCTTCATAAGACTTTCCCACAGGCTGCAGGTGCGAGTGCAAACAAGGACACTCCCATTCTTCAGTGTCACGGTGAGATGGATCCCATGATCCCGGTGCAGTTTGGGGCCATGACAGCAGAGAAGCTCAAGACCATTGTGTCTCCAGAGAATATCACCTTCCGCACCTACCCGGGTCTCATGCACAGCTCCTGTCCTCAGGTCAGTCTCCAGACACTTTAGCATATTTGAGCTCATTATGAGggcttttataaaaaacaaagcagaaaataGTAGTATCAGCTTATTTATATCTGCTTGTTTAGTTGTGACCTctgtaatactgtttccaggaTTAAGCTGTTACTCAGTTGAATTGAGATAATTTTTGTATATGACCCCTTTTTAGTCATAAAAcacattaaagtgtttttttttttttttttataaaa
>TCONS_00028425
tgatcattttaagttttattttgatcatttcagTAATAATTTTGAAGTTATGACTTATTCTTAAcccgtttgagtttctttctactgatAAACACAAAAAGGGATATTTTGATGACCGCTGGcaccctgtaaccattgacttccattgtatttgtttttttcatactatagatgtcaatggtgtttttagttttttttttcagaatatcttcttatGTCTCGTATCTCATAATGCTTTATTACTACTTAAGGCTGTGTACATttccatttttgagtgaaccCTCCCTTTAAACTCGTGATATGGTCGCTCAGGCCACTCAGGCACGGATGAAGCCATTAAAGTGGAGTGTTTTGCCTCCCGCAGCTGTCAAGATTTGATTTCTCAGTGCTGTCATGTGCTTCCTGGAAAACAGGGACCCGTGGTTTTCATTTAGGCTTCATTAGAAACGGTTTTCTGGGAATTGGTCTCAAGCAGACGTCTGCGAGTACAAACTTGTGATCCCCACAGCCATAAGAGGAAAATGAAGCTCGCACCGTATGATTACCATAAGCATCGGCGCTTATCCAGTAGGCTAAATCACCCTgtcattaaaggATGCTCTGCCGGTGCACTCTTAGGTTTAGCTGGGCATGGATTGCTTTAGTTGAAATGAGTGGAAATTAAACCAACTTTTGTTAATCATTCTGCAGCCTGCTGACAGTTTCTTTCTAAAATCGCTGCATCTCCTCACATTGTATGTGTGGCAACAACATGTCTGTACCCCTGCTCGCTGAAGCCGTGACGGTGCCTGGGACGGAGAAGGAGACGGCTGTGGTGATCTTCCTTCATGGCTTGGGCGATACAGGACACGGCTGGGCTGATGCCATGACATCGATTCGACTGCCGTACATCAAATACATCTGCCCACATGCgcCCAGAATCCCTGTAACGCTCAACTTGAAGATGACCATGCCGTCATGgTTTGATCTGATGGGCTTAAGCCCGGAATCACCGGAGGATGAAGCAGGGATTAAGAGAGCAGCAGAGAACATAAAAGCCATCATCGATCACGAGGTAAAGAACGGTATACCATCCAATCGTATTGTCCTCGGGGGCTTCTCTCAGGGTGGAGCTCTGTCTCTCTACACCGCTCTGACCTCTCAGCAGCAGCTCGCTGGCGTCGTCGGACTCAGCTGTTGGCTTCCCCTTCATAAGACTTTCCCACAGGCTGCAGGTGCGAGTGCAAACAAGGACACTCCCATTCTTCAGTGTCACGGTGAGATGGATCCCATGATCCCGGTGCAGTTTGGGGCCATGACAGCAGAGAAGCTCAAGACCATTGTGTCTCCAGAGAATATCACCTTCCGCACCTACCCGGGTCTCATGCACAGCTCCTGTCCTCAGGAGATGTCTGCTGTGAAGGACTTCATTGAAAAGCAGTTGCCCCGAGTCTGACCTCATTCTAACTCACTGTGACCCTT

Function

symbol description
lypla2 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLA2 (lysophospholipase 2).

GO:

id name namespace
GO:0002084 protein depalmitoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism

ZFIN:

id description
ZDB-GENE-040426-1715 Predicted to enable carboxylic ester hydrolase activity and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be active in cytoplasm. Orthologous to human LYPLA2 (lysophospholipase 2).

Ensembl:

ensembl_id ENSDARG00000053656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028423 False 3346 mRNA 0.39 10 43884120 43901467
TCONS_00028424 False 918 mRNA 0.48 9 43884183 43896659
TCONS_00028425 True 1461 mRNA 0.47 11 43885770 43898949

Neighbor

gene id symbol gene type direction distance location
XLOC_014304 pithd1 coding upstream 3169 43878049 ~ 43880951 (+)
XLOC_014303 eloa coding upstream 50125 43822968 ~ 43833995 (+)
XLOC_014302 NA coding upstream 79710 43800832 ~ 43804410 (+)
XLOC_014300 NA coding upstream 92544 43787003 ~ 43791576 (+)
XLOC_014301 NA coding upstream 93404 43787142 ~ 43790716 (+)
XLOC_014306 ankib1a coding downstream 4204 43905671 ~ 43960753 (+)
XLOC_014307 gatad1 coding downstream 67896 43969363 ~ 43976522 (+)
XLOC_014308 nkd3 coding downstream 77347 43978814 ~ 43980876 (+)
XLOC_014309 CR786578.2 coding downstream 85922 43987389 ~ 43989462 (+)
XLOC_014310 nkd3 coding downstream 94469 43995936 ~ 43998061 (+)
XLOC_014295 CR356238.1 non-coding upstream 218609 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 335109 43546647 ~ 43549011 (+)
XLOC_014314 NA non-coding downstream 1015632 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1457810 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 non-coding downstream 1607398 45508865 ~ 45508981 (+)
XLOC_014317 NA non-coding downstream 1825747 45727214 ~ 45728062 (+)
XLOC_014321 NA non-coding downstream 2189850 46091317 ~ 46093652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_00965111_00970121 LYPLA2, LYPA2 coding CI01000054 null 964642 ~ 970121 (-)