XLOC_014308 (nkd3)


Basic Information

Item Value
gene id XLOC_014308
gene name nkd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43978814 ~ 43980876 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028429
GTGAACTGATCGACAGCTACTTTCGTGTCTTTCAGTGTTTTTTGACGACTTTTGAATTGAGCATTGACTGTTCATAATGTCACTGTTTACCAGTGTATTTCGGCAGCTGTCTGCATGTTTTACACCTTCATGGGGCAGAAGGCTGAGCCCTCAGATCGCTGATATAGGTGCAGAGGCAGGAGAAAGCAAGGCCatgtccacacagaaacaccgcaAGGTGAAGTCCCATCATGGACACAGACCGGGCAAAGAGGGAGAGGGTCTGAAAGACCAGGCTGAAGAGGAAAAACAAGCTCTCAGTGCTGAAAACATACAGAGCACCGAGAGAGAAGGAGGAaacggagaacctggaggaaagaaaagaaagaggagaaagctgaaaaacaaaaaGACTCTTCCTCTTCCTGTAGAGGTCAAACCTCTGCCAGCTCCAGCctgtttctcctcctcctcccctcCAGTTGGAGATCAACCTGAACATCCAGATGTCCTCGCTCTCCCAGCTGCTGGCCTCAAACCTCTGCTGAAAGACAAAGAGTCTCTTCCTCGTCTTGTTGAGGTCAAACCTCTGCCAGCTTCAGCCTGTTTCTCCTCCTTAACACCAGTTGGAGATCAACCTGAACATCCAGAGGTTCTCGTTCTCCCAGCCTCTCACCTCAAAGCCTTGTCACCTCTCTCAAACCCAGCATCCCGTCCTCAATCGCCTGTTGAGGAAACTGATGAGGTGCTGCCAAGCTCAGTGATCCAAGTGGCTCCATGTGTCTCTCCAGAACCAGTCCTCCTTCCCCTCCAGAGCTCTTCTGAGGTGGCTTCTCTGTGCTCGATTCCTTCATTCAGTGAGCCGTCTCTCCTCCAGAGTCCTCCTGAAACGCTGCCGATTCCTCCAATCTTTGCGTTTGACAAGGTGGTGTCTCTTGTAAAGCCTCAAGCATCTGAGTGTTCTCCCTCTTCAGGCCTCATGCTCTTTGACTTTGAGGATGAGGAGCTTGAATTCATGGAGTACACGGAGGAAGACATAGAAGCTTTCTATGAGTCTGAAATGAAGCCGAGGCGGATGGCGGCTTGGCTGGAGCAGGAGGAAGTGACGGAGGTCCAGATAGATGGAGGAAAGGGAGCCTCGCAGGTCATACAAAACCCGCTGAATGAGGTGTCTCGTGATGAGGCGTTTGAGGAGCTCCTGATTCAGGCGTTCTGCACCGGGCCTCCTGTGTACACCGAAATCAAGAGCAGGAAGAAGCCAAAGAGGAACGGCCCGCTGGTTCTGTTCAGCTTGATGGAGGAGAAGGTGAAGAAAAAGCAGGAAAAGAAACTGCGTAAGGAGGAGGAGAGAAATGAGAGAAATCTCCTGCGGGAACGCTACAGAAATGATCCCAAACTCAAACACTTGTGCATCAATAAGCACAATCCCAACTTCTGCTGGTCCTGAAGCGGATCACCGTCCCTCCCTGACACCTCCTCACACCTTTACCCTACT

Function

symbol description
nkd3 Predicted to enable metal ion binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in cytoplasm and plasma membrane. Is expressed in blastoderm; blastodisc; somite; and tail bud.

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-63 Predicted to enable metal ion binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in cytoplasm and plasma membrane. Is expressed in blastoderm; blastodisc; somite; and tail bud.

Ensembl:

ensembl_id ENSDARG00000069984

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028429 True 1474 mRNA 0.51 2 43978814 43980876

Neighbor

gene id symbol gene type direction distance location
XLOC_014307 gatad1 coding upstream 2292 43969363 ~ 43976522 (+)
XLOC_014306 ankib1a coding upstream 18061 43905671 ~ 43960753 (+)
XLOC_014305 lypla2 coding upstream 77347 43884120 ~ 43901467 (+)
XLOC_014304 pithd1 coding upstream 97863 43878049 ~ 43880951 (+)
XLOC_014303 eloa coding upstream 144819 43822968 ~ 43833995 (+)
XLOC_014309 CR786578.2 coding downstream 6513 43987389 ~ 43989462 (+)
XLOC_014310 nkd3 coding downstream 15060 43995936 ~ 43998061 (+)
XLOC_014311 nkd3 coding downstream 23472 44004348 ~ 44006445 (+)
XLOC_014312 nkd3 coding downstream 28597 44009473 ~ 44036792 (+)
XLOC_014313 lrrc14b coding downstream 58973 44039849 ~ 44047176 (+)
XLOC_014302 NA non-coding upstream 174404 43800832 ~ 43804410 (+)
XLOC_014300 NA non-coding upstream 187238 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding upstream 188098 43787142 ~ 43790716 (+)
XLOC_014295 CR356238.1 non-coding upstream 313303 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 429803 43546647 ~ 43549011 (+)
XLOC_014314 NA non-coding downstream 936223 44917099 ~ 44959698 (+)
XLOC_014315 NA non-coding downstream 1378401 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 non-coding downstream 1527989 45508865 ~ 45508981 (+)
XLOC_014317 NA non-coding downstream 1746338 45727214 ~ 45728062 (+)
XLOC_014321 NA non-coding downstream 2110441 46091317 ~ 46093652 (+)

Expression


Co-expression Network