XLOC_014310 (nkd3)


Basic Information

Item Value
gene id XLOC_014310
gene name nkd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 43995936 ~ 43998061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028431
GTTGGTGTGTTTAGGAGTGAACTGATCGACAGCTACTTTCGTGTCTTTCAGTGTTTTTTGACGACTTTTGAATTGAGTGACAGCATTGACTGTTCATAATGTCACTGTTTACCAGTGTATTTCGGCAGCTGTCTGCATGTTTTACACCTTCATGGGGCAGAAGGCTGAGCCCTCAGATCGCTGATATAGGTGCAGAGGCAGGAGAAAGCAAGGCCatgtccacacagaaacaccgcaAGGTGAAGTCCCATCATGGACACAGACCGGGCAAAGAGGGAGAGGGTCTGAAAGACCAGGCTGAAGAGGAAAAACAAGCTCTCAGTGCTGAAAACATACAGAGCACCGAGAGAGAAGGAGGAAatggagaacctggaggaaagaaaagaaagaggagaaagctgaaaaacaaaaaGACTCTTCCTCTTCCTGTAGAGGTCAAACCTCTGCCAGCTCCAGCCTGTTTCTCCTCCTCCCCTCCAGTTGGAGATCAACCTGAACATCCAGATGTCCTCGCTCTCCCAGCTGCTGGCCTCAAACCTCTGCTGAAAGACAAAGAGTCTCTTCCTCGTCTTGTTGAGGTCAAACCTCTACCAGCTTCAGCCTGTTTCTCCTCCTTAACACCAGTTGGAGATCAACCTGAACATCCAGAGGTTCTCGTTCTCCCAGCCTCTCACCTCAAAGCCTTGTCACCTCTCTCAAACCCAGCATCCCGTCCTCAATCGCCTGTTGAGGAAACTGATGAGGTGCTGCCAAGCTCAGTGATCCAAGTGGCTCCATGTGTCTCTCCAGAACCAGTCCTCCTTCCCCTCCAGAGCTCTTCTGAGGTGGCTTCTCTGTGCTCGATTCCTTCATTCAGTGAGCCGTCTCTCCTCCAGAGTCCTCCTGAAACGCTGCCGATTCCTCCAATCTTTGCGTTTACTGAGGTGGTGTCTCTTGTAAAGCCTCAAGCATCTGAGTGTTCTCCCTCTTCAGGCCTCATGCTCTTTGACTTTGAGGATGAGGAGCTTAAATTCATGGAGTACACGGAGGAAGACATAGAAGCTTTCTATGAGTCTGAAATGAAGCCGAGGCGGATGGCGGCTTGGTTGGAGCAGGAGGAAGTGACGGAGGTCCAGAAAGATGGAGGAAAGGGAGCCTCGCAGGTCATACAAAACCCGCTGAATGAGGTGTCTCGTGATGAGGCGTTTGAGGAGCTCCTGATTCAGGCGTTCTGCACCGGGCCTCCTGTGTACACCGAAATCAAGAGCAGGAAGAAGCCAAAGAGGAACGGCCCGCTGGTTCTTTTCAGCTTGATGGAGGAGAAGGTGAAGAAAAAGCAGGAAAAGAAACTGCGTAAGGAGGAGGAGAGAAATGAGAGAAATCTCCTGCGGGAACGCTACAGAAATGATCCCAAACTCAAACACTTGTGCATCAATAAGCACAATCCCAACTTCTGCTGGTCCTGAAGCGGATCACCGTCCCTCCCTGACACCTCCTCACACCTTTACCCTACTGCACATTCCTGCCTGTAAATAAAAGTGTGCATAGCAAAGCTGAA

Function

symbol description
nkd3 Predicted to enable metal ion binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in cytoplasm and plasma membrane. Is expressed in blastoderm; blastodisc; somite; and tail bud.

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-63 Predicted to enable metal ion binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be located in cytoplasm and plasma membrane. Is expressed in blastoderm; blastodisc; somite; and tail bud.

Ensembl:

ensembl_id ENSDARG00000086218

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028431 True 1537 mRNA 0.50 2 43995936 43998061

Neighbor

gene id symbol gene type direction distance location
XLOC_014309 CR786578.2 coding upstream 6474 43987389 ~ 43989462 (+)
XLOC_014308 nkd3 coding upstream 15060 43978814 ~ 43980876 (+)
XLOC_014307 gatad1 coding upstream 19414 43969363 ~ 43976522 (+)
XLOC_014306 ankib1a coding upstream 35183 43905671 ~ 43960753 (+)
XLOC_014305 lypla2 coding upstream 94469 43884120 ~ 43901467 (+)
XLOC_014311 nkd3 coding downstream 6287 44004348 ~ 44006445 (+)
XLOC_014312 nkd3 coding downstream 11412 44009473 ~ 44036792 (+)
XLOC_014313 lrrc14b coding downstream 41788 44039849 ~ 44047176 (+)
XLOC_014314 NA coding downstream 919038 44917099 ~ 44959698 (+)
XLOC_014315 NA coding downstream 1361216 45359277 ~ 45365727 (+)
XLOC_014302 NA non-coding upstream 191526 43800832 ~ 43804410 (+)
XLOC_014300 NA non-coding upstream 204360 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding upstream 205220 43787142 ~ 43790716 (+)
XLOC_014295 CR356238.1 non-coding upstream 330425 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 446925 43546647 ~ 43549011 (+)
XLOC_014316 CT737154.1 non-coding downstream 1510804 45508865 ~ 45508981 (+)
XLOC_014317 NA non-coding downstream 1729153 45727214 ~ 45728062 (+)
XLOC_014321 NA non-coding downstream 2093256 46091317 ~ 46093652 (+)

Expression


Co-expression Network