XLOC_014313 (lrrc14b)


Basic Information

Item Value
gene id XLOC_014313
gene name lrrc14b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 44039849 ~ 44047176 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028435
GTTCTGTTCTCAGGCTGACACGCATGTAAACCCTATCTGAAAGAGAGCAGAAGAAACAAACACGCCACGTCTCCAAGACCTGACCGTGGGCTTGACCTCAACAACAATGAAGACTCTAAAGTTCCTCTCAGCTGAAGCCTTCGTTCAAACTGGCCCAAACGCACGTAGAAACCTCCACTGCTTGTCCTACAATCTCTACCCAATCCTCTTCAAGGCTAGTTATCTGCACGAGGAGGCTTCGTTTCTCCACGACCTGGTGCAAACGTGGCCTCTGACTGAGCTGAACTTGCGTAAACTGTTAGGAAAGACGACGGACTGTCCTGAAGACCTCACGTGCAGCACTTGCAGGCTCTGTCTTGAAGCGTTTCTCACAGGTTTGAGGGACTATGTGCTTCAAGCTTCAACCACTTACGCTAAAATCCTGCAGGTTGTGGATTTAATAGGCATTCGAGACACTGAACACCAGATTTGTCAATGCAGACGGACTCTTGGGCGTTGGGCGCGCACTGAAATGCTCACACGAGTGTGTTATGAGACTATGGTGTCCATGCAAGCCGGCCAATCAGCACCGTCTGCGTTCAATGTGGAGGTTGACGTCCGATTAGATGCATTTGTGACCGGACGCAATTACGAGGTAGTCTCTCAGGCTCTATTGCTGCGCAGACATTGCCCGTTGAAACTGCAGTTTGTTGGTCTGCGCGTGGATTCGTTGAGTCTCAGGAACCTGTTTTACCTTCTGAAGCTGGTGGAGTCTCACGGCCCGCAGAAGCTGGAGGTGGTGCACAATGTCCACCTGGAGGCTCCACATATTGAGGTGATGCTGTCCCAGCTGAAGTTCCCTCGCCTGCGCTCGCTCACCTTCCCCGCGCAGGCTCTGAATGTGCACCGGCTGGGATTGGAGGATCAGGATCTCATGAGGGTTCTGGGGGAGCTGATGAGCAAACTGACTGAGCTGAGAGAGCTATATCTGGGGTTCTCCACGCTCACTGGACACCTGAGGAAACTGCTGAGTCCTCTAAATACGCCACTGGAGTGTATCGAGCTGGCCAACTGCAGTATCAATGCTCTGGACATGGCCTACTTCGCTAACAGCCTGCACAGTGAACACTTAGTAAAGCTGGATCTGAGCGGCCATGAGGTGGCAGATCTCTTCCCCAACACCTTCCGGAAGCTTCTGCAGCGCTGCTCCAGCACACTCATAAGTCTGGGTCTGGAGGAGTGCGGACTGGATGATGAGAAGCTGGATCTGCTCACCCAGGCACTCACACCCTGCCACGGCCTGCAGGAGCTGAAGATTCTGGGCAATCCTCTGACTTCTGCTGCCCTGCACAGACTATTCAACACGCTGGCCAACGCTTACCCCGCGCTCAGATATGTTGAGCTGCCTGTGCCTCGAGACTGTTATCCAGAAAGTGTGACGTACCCGCTGGATGATCGGACTCTGGTCAACTACGACAGTGATAAGTTCCAGCAGGCCAGGACTGAACTTGTTGGCATTCTGGAGCGTGAAGGGAAAGGACACGTGGAAGTCTGTACGCCGTTACTCGGGGTCTACGATGCTGACATCAACGAGACCAGTAATGAGCTGGGGGTCTCCATGCTGAGCTCATTCAATAACGTCATCGGAAGCTTCATTGATACGGTTAACACGGTCACTCAACGCAGAGAGCACAGACTGATGGAGTAA

Function

symbol description
lrrc14b Predicted to act upstream of or within several processes, including negative regulation of apoptotic process; negative regulation of transcription, DNA-templated; and positive regulation of cell population proliferation. Predicted to be active in cytoplasm. Orthologous to human LRRC14B (leucine rich repeat containing 14B).

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-910 Predicted to act upstream of or within several processes, including negative regulation of apoptotic process; negative regulation of transcription, DNA-templated; and positive regulation of cell population proliferation. Predicted to be active in cytoplasm. Orthologous to human LRRC14B (leucine rich repeat containing 14B).

Ensembl:

ensembl_id ENSDARG00000060788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028435 True 1687 mRNA 0.53 3 44039849 44047176

Neighbor

gene id symbol gene type direction distance location
XLOC_014312 nkd3 coding upstream 3057 44009473 ~ 44036792 (+)
XLOC_014311 nkd3 coding upstream 33404 44004348 ~ 44006445 (+)
XLOC_014310 nkd3 coding upstream 41788 43995936 ~ 43998061 (+)
XLOC_014309 CR786578.2 coding upstream 50387 43987389 ~ 43989462 (+)
XLOC_014308 nkd3 coding upstream 58973 43978814 ~ 43980876 (+)
XLOC_014314 NA coding downstream 869923 44917099 ~ 44959698 (+)
XLOC_014315 NA coding downstream 1312101 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 coding downstream 1461689 45508865 ~ 45508981 (+)
XLOC_014317 NA coding downstream 1680038 45727214 ~ 45728062 (+)
XLOC_014318 FO704771.1 coding downstream 1797187 45844363 ~ 45963264 (+)
XLOC_014302 NA non-coding upstream 235439 43800832 ~ 43804410 (+)
XLOC_014300 NA non-coding upstream 248273 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding upstream 249133 43787142 ~ 43790716 (+)
XLOC_014295 CR356238.1 non-coding upstream 374338 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 490838 43546647 ~ 43549011 (+)
XLOC_014321 NA non-coding downstream 2044141 46091317 ~ 46093652 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_00888859_00895223 LRRC14B coding CI01000054 null 888448 ~ 895223 (-)