XLOC_014314


Basic Information

Item Value
gene id XLOC_014314
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 44917099 ~ 44959698 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029734
aagaaaacaaaaaacaaaacgaaaaacagaaacaaaacaaaaacaataaaaactaacaaaaacaaaaacaaaactgaaaaaaaacccattcaaaataacaacaaaacaattaaaaataaaactgaatataaaatcaaacaaacaaaaactaaacgaataataaacaaaataatcaaaaataaacaaaacaaaacagaaacaaaaagcTAACAAAAACGgaaccaaacaaaaaacaaaaaacaaacaaaaacaaaacaaataagttgaaaacaacaaaacaatcataaatagcaaaataaaaaaaacaaaacaaataaaacaaaataatcaaaaacaaacaaaacaaaacagaaacaaaaaactaatcgaacacaaaacaaccaaaaacatcaacaaaacaaaaaacaaaacaatcgaaaataacaaaatcaaaaaatcaaacaaaacaaaaaacaaaacaaatgaaaaaccaATTAATCAAACAGAcaaaactaaacagaaacaaagaaaactaacaaaaacaaaaccaaacaaaacaacaaaacaaaaaataaagctgaaaaaaacaaatcaaaccaagcaaaaaacaaacacaacaatcaaaaacatcaaaaaaaaaaaaaaaaaaaattttggggttattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaatatatatatatatatatatatatatatatatatatatatatatatat
>TCONS_00029733
aagaaaacaaaaaacaaaacgaaaaacagaaacaaaacaaaaacaataaaaactaacaaaaacaaaaacaaaactgaaaaaaaacccattcaaaataacaacaaaacaattaaaaataaaactgaatataaaatcaaacaaacaaaaactaaacgaataataaacaaaataatcaaaaataaacaaaacaaaacagaaacaaaaagcTAACAAAAACGgaaccaaacaaaaaacaaaaaacaaacaaaaacaaaacaaataagttgaaaacaacaaaacaatcataaatagcaaaataaaaaaaacaaaacaaataaaacaaaataatcaaaaacaaacaaaacaaaacagaaacaaaaaactaatcgaacacaaaacaaccaaaaacatcaacaaaacaaaaaacaaaacaatcgaaaataacaaaatcaaaaaatcaaacaaaacaaaaaacaaaacaaatgaaaaaccaATTAATCAAACAGAcaaaactaaacagaaacaaagaaaactaacaaaaacaaaaccaaacaaaacaacaaaacaaaaaataaagctgaaaaaaacaaatcaaaccaagcaaaaaacaaacacaacaatcaaaaacatcaaaaaaaaaaaaaaaaaaaatttttttttttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaatatatatatatatatatatatatatatatatatatatatatatatat
>TCONS_00029732
aagaaaacaaaaaacaaaacgaaaaacagaaacaaaacaaaaacaataaaaactaacaaaaacaaaaacaaaactgaaaaaaaacccattcaaaataacaacaaaacaattaaaaataaaactgaatataaaatcaaacaaacaaaaactaaacgaataataaacaaaataatcaaaaataaacaaaacaaaacagaaacaaaaagcTAACAAAAACGgaaccaaacaaaaaacaaaaaacaaacaaaaacaaaacaaataagttgaaaacaacaaaacaatcataaatagcaaaataaaaaaaacaaaacaaataaaacaaaataatcaaaaacaaacaaaacaaaacagaaacaaaaaactaatcgaacacaaaacaaccaaaaacatcaacaaaacaaaaaacaaaacaatcgaaaataacaaaatcaaaaaatcaaacaaaacaaaaaacaaaacaaatgaaaaaccaATTAATCAAACAGAcaaaactaaacagaaacaaagaaaactaacaaaaacaaaaccaaacaaaacaacaaaacaaaaaataaagctgaaaaaaacaaatcaaaccaagcaaaaaacaaacacaacaatcaaaaacatcaaaaaaaaaaaaaaaaaaaattttttttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0007220 Notch receptor processing biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0070765 gamma-secretase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029734 False 780 lncRNA 0.17 3 44917099 44959698
TCONS_00029733 False 783 lncRNA 0.17 3 44917099 44959698
TCONS_00029732 True 781 lncRNA 0.17 3 44917099 44959698

Neighbor

gene id symbol gene type direction distance location
XLOC_014313 lrrc14b coding upstream 869923 44039849 ~ 44047176 (+)
XLOC_014312 nkd3 coding upstream 880307 44009473 ~ 44036792 (+)
XLOC_014311 nkd3 coding upstream 910654 44004348 ~ 44006445 (+)
XLOC_014310 nkd3 coding upstream 919038 43995936 ~ 43998061 (+)
XLOC_014309 CR786578.2 coding upstream 927637 43987389 ~ 43989462 (+)
XLOC_014315 NA coding downstream 399579 45359277 ~ 45365727 (+)
XLOC_014316 CT737154.1 coding downstream 549167 45508865 ~ 45508981 (+)
XLOC_014317 NA coding downstream 767516 45727214 ~ 45728062 (+)
XLOC_014318 FO704771.1 coding downstream 884665 45844363 ~ 45963264 (+)
XLOC_014319 utp23 coding downstream 1002318 45962016 ~ 45967718 (+)
XLOC_014302 NA non-coding upstream 1112689 43800832 ~ 43804410 (+)
XLOC_014300 NA non-coding upstream 1125523 43787003 ~ 43791576 (+)
XLOC_014301 NA non-coding upstream 1126383 43787142 ~ 43790716 (+)
XLOC_014295 CR356238.1 non-coding upstream 1251588 43665391 ~ 43665511 (+)
XLOC_014291 NA non-coding upstream 1368088 43546647 ~ 43549011 (+)
XLOC_014321 NA non-coding downstream 1131619 46091317 ~ 46093652 (+)
XLOC_014325 NA non-coding downstream 1256637 46216335 ~ 46219040 (+)

Expression


Co-expression Network