XLOC_014319 (utp23)


Basic Information

Item Value
gene id XLOC_014319
gene name utp23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 45962016 ~ 45967718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028438
TCCACACGGTACGTATTTGCCGTGACCACACTCTTCCCATGCGTATGGCGTAAGATTCGGCTGATTTGTTGACATGTTTTCATAAGTATCGATCTCCACGTGTGCGGATTTACTGATATTATTCTACTTTACAAGATACTCAGTTAATTTAAACGATCTGCGCTTTGTGTAGTAGTTCAGCATGAAGATAAAACGGCAGAAACACGCGAAGAAGACCATCAGTTTCTATAAGTATAACTTCTCCTTTAGGGAACCTTTCCAGATATTAATCGACGGCACGTTTTGTCAGGCGGCGTTAAAGAATAAGATTCAAATCAAAGAGCAGCTGCCGAAATACCTGATGGGGGAGATCCAGCTCTGCACCACAAACTGTGCACTGAAGGAACTGGAAAGCCTTGCGAAAGACCTCTATGGAGCAAAACTGATCTTACAGAGATTTCAGATTAGGAAATGCAAACACATGAAAGATCCGGTGCCTGCGTCAGAGTGTTTGCTATCAATGCTTGCAGAGACAAATCCACATCATTACTTCATTGCAACCCAGGATCAGCAGCTGACGACGGCGCTGAAAAAGATCCCCGGCGTTCCTCTGCTCTACATTATCCTCAACACCATGGTTTTGGACAAACCCTCTGAGCGAACGCTGAAACATGTGGAAGCGGTTCAGCTGGGAGAAATCGTGAATCCGGCTCAGCAGAAGAGCTTGCAGAGTCTGAAGGAGAAAGAGGGAATCAGCGGAGATGCAGAGAAGAGAGGAAGAAAACGCAAGAGGAAACAGAGCAATCCAAACCCGCTGAGCTgcctgaagaagaagaagaagaaggcaACGCCTCAGCAGCCCAAAAACCCAGACGgagagaagaagaggaagagaagcAGACACAGAAAACACAAACCCGCTGGAGGAGAGCAGACAGAGGTCAGATCATTAACCTCAGGAGGACAGAGTGTTTGAGGATTGAAAAGACTGATGTTTTTCTTGAATTGGCTTATGCATATAAGCCAGCAAGCCACTTGTTTTGACTAATAAACAAGCGTTTCTTTATTACCAA

Function

symbol description
utp23 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; lens placode; optic vesicle; presumptive neural retina; and segmental plate. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human UTP23 (UTP23 small subunit processome component).

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component
GO:0070181 small ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-050417-353 Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; lens placode; optic vesicle; presumptive neural retina; and segmental plate. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human UTP23 (UTP23 small subunit processome component).

Ensembl:

ensembl_id ENSDARG00000105012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028438 True 1052 mRNA 0.45 3 45962016 45967718

Neighbor

gene id symbol gene type direction distance location
XLOC_014317 NA coding upstream 233954 45727214 ~ 45728062 (+)
XLOC_014316 CT737154.1 coding upstream 453035 45508865 ~ 45508981 (+)
XLOC_014315 NA coding upstream 596289 45359277 ~ 45365727 (+)
XLOC_014314 NA coding upstream 1002318 44917099 ~ 44959698 (+)
XLOC_014313 lrrc14b coding upstream 1914840 44039849 ~ 44047176 (+)
XLOC_014320 si:ch211-153f2.7 coding downstream 2974 45970692 ~ 45980732 (+)
XLOC_014321 NA coding downstream 123599 46091317 ~ 46093652 (+)
XLOC_014322 stmnd1 coding downstream 127492 46095210 ~ 46100763 (+)
XLOC_014323 rbm24a coding downstream 146110 46113828 ~ 46148977 (+)
XLOC_014324 cap2 coding downstream 190360 46158078 ~ 46210904 (+)
XLOC_014302 NA non-coding upstream 2157606 43800832 ~ 43804410 (+)
XLOC_014325 NA non-coding downstream 248617 46216335 ~ 46219040 (+)
XLOC_014331 NA non-coding downstream 455373 46423091 ~ 46438135 (+)
XLOC_014334 NA non-coding downstream 1220812 47188530 ~ 47191501 (+)
XLOC_014337 CU138512.1 non-coding downstream 1338905 47306623 ~ 47306738 (+)

Expression


Co-expression Network