XLOC_014325


Basic Information

Item Value
gene id XLOC_014325
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46216335 ~ 46219040 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029735
taagtggattaaacgcAAATCAATTAAGTCATCTCCAAAACTGAATTTCCCCTTTAATCTGCTTTTAGATGGACTGAAGATTAATTTGAGGTGATTGAAAGGAGAAAATTGagcattattaataatttaatcaagTATCTGCTctagtttaaattaatatttgtagtcagtttgattggtttaagttgagatgactagaaaagtttgaTTCAACTACAAAAattaaggcagcaagattttattttacagtgaaggaacaaaaaatactgcaataataatattaaaaatactaatataatgCATGTCAATTGGCTGATTCCCCCCAGCTTTTTTCCTGCATATCTGCCTTTGTgttcaacattaaaaaaactcaattttgagtgaactgtccctttaaatatcaCAAACATCACAGCATTAAAGCAAGATGACAACACTTTAGGACCTTATGTGTCATTTCATTGATtgcaactttaaataaatatttattttctacatCATCAGCTTCAGAATCAATCAATAAAAGCTCTGTCaaaattgctgggttccacacaaccaagttgtgttgggacaacatgatgaaattaagttgacttattagtttttgcaaattcaagtaaactgaacataaaacatataAGTCGTCTCCAAAAAAACTCCAGATTTTtggtgtttcagctcattttaaactcCGATGAGACGTTAATGTTGACACGtttttcatttgtgtgtgaactgcccctttaaatatGCCATTATATAATACAGCACGAAAACAAGATGACCACATTGCAGGATTTTATTTGTCACTTCATTGATtacaactttaaaaatatttagtttctaCATCATCtcacacatttaaaacaacaatataaagtCAACAGCTTCAAAAGCCAAAGGAGTCTCGTTTGTTAATTCAGTTTCTTGCTGTAAATGTCAGATCAGTGTTTGATGACCATGTTTCCCTCTGAATCCTGAGTAAAGAGCATCTCTGCGTCTGACTCTTCATCCTGACTGCTCCTGTAATCTGCAGGCTGTAGATCTGCGCTCTCTAAACACTGATCACGGTGAGCGATCACACAGAAACCTTCAGAATCCTGAGTAAACATCGACGAAACACTCTCTTCCTTACACGGATTACTGGGCGGACATCTGTATTTCCCCTTTAATCTGCATTTGGATGGACTGGAGATTGATTTATGCTTGAAAGGAGAGGATGGAGTGTTTTTAACAGGCGAGCTGTTCTCTTTTCCCATTCGTTTCAATGGAGATGCTTTCGTTTTTGGCTCTTTATGAAGATTTGCATGTGGTTTGTGTTCATTTACAGATCTGGATGTTAAGATGGACGTCCTAAATGAGGATTTTTGATCTCTTAGATGTTCGTTTATAGGACTTGGAGACTGAACGACGTGTCCATGGTGTGGATTTTCAGGATTCATCTGATTTGTATATACGTTTTCAGCATCTTGATCACTGTATTCTTCAGTGTCTGATTTATTTTGGTCAGTGTGATAAGAAATGAGTCTCCTTTTTCCAGGCGGTTGTTCTTCTTCCGGATCTTCTCCGTTTATGAAATGAAGAAAGCGCTGATGGTTATTATCACTGGCTGATGTTTCTTCTGAATCTCCATCATCTGATGTGTGAATGATCGAGTCAATTGATGGATCCAAACTGATGGCGTGTTTTCGCTTGGTGCTGGTGTTTGTCTCAGGGTTACAGTCTGAG
>TCONS_00029736
AACAAGATGACCACATTGCAGGATTTTATTTGTCACTTCATTGATtacaactttaaaaatatttagtttctaCATCATCtcacacatttaaaacaacaatataaagtCAACAGCTTCAAAAGCCAAAGGAGTCTCGTTTGTTAATTCAGTTTCTTGCTGTAAATGTCAGATCAGTGTTTGATGACCATGTTTCCCTCTGAATCCTGAGTAAAGAGCATCTCTGCGTCTGACTCTTCATCCTGACTGCTCCTGTAATCTGCAGGCTGTAGATCTGCGCTCTCTAAACACTGATCACGGTGAGCGATCACACAGAAACCTTCAGAATCCTGAGTAAACATCGACGAAACACTCTCTTCCTTACACGGATTACTGGGCGGACATCTGTATTTCCCCTTTAATCTGCATTTGGATGGACTGGAGATTGATTTATGCTTGAAAGGAGAGGATGGAGTGTTTTTAACAGGCGAGCTGTTCTCTTTTCCCATTCGTTTCAATGGAGATGCTTTCGTTTTTGGCTCTTTATGAAGATTTGCATGTGGTTTGTGTTCATTTACAGATCTGGATGTTAAGATGGACGTCCTAAATGAGGATTTTTGATCTCTTAGATGTTCGTTTATAGGACTTGGAGACTGAACGACGTGTCCATGGTGTGGATTTTCAGGATTCATCTGATTTGTATATACGTTTTCAGCATCTTGATCACTGTATTCTTCAGTGTCTGATTTATTTTGGTCAGTGTGATAAGAAATGAGTCTCCTTTTTCCAGGCGGTTGTTCTTCTTCCGGATCTTCTCCGTTTATGAAATGAAGAAAGCGCTGATGGTTATTATCACTGGCTGATGTTTCTTCTGAATCTCCATCATCTGATGTGTGAATGATCGAGTCAATTGATGGATCCAAACTGATGGCGTGTTTTCGCTTGGTGCTGGTGTTTGTCTCAGGGTTACAGTCTGAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029735 False 1728 lncRNA 0.36 3 46216335 46219040
TCONS_00029736 True 954 lncRNA 0.40 2 46217109 46219040

Neighbor

gene id symbol gene type direction distance location
XLOC_014324 cap2 coding upstream 5431 46158078 ~ 46210904 (+)
XLOC_014323 rbm24a coding upstream 67358 46113828 ~ 46148977 (+)
XLOC_014322 stmnd1 coding upstream 115572 46095210 ~ 46100763 (+)
XLOC_014321 NA coding upstream 122683 46091317 ~ 46093652 (+)
XLOC_014320 si:ch211-153f2.7 coding upstream 235603 45970692 ~ 45980732 (+)
XLOC_014326 vps28 coding downstream 3388 46222428 ~ 46238624 (+)
XLOC_014327 mapk15 coding downstream 21131 46240171 ~ 46303622 (+)
XLOC_014328 rprd1a coding downstream 90513 46309553 ~ 46333810 (+)
XLOC_014329 slc30a8 coding downstream 124345 46343385 ~ 46362232 (+)
XLOC_014330 med30 coding downstream 153075 46372115 ~ 46411358 (+)
XLOC_014317 NA non-coding upstream 488273 45727214 ~ 45728062 (+)
XLOC_014316 CT737154.1 non-coding upstream 707354 45508865 ~ 45508981 (+)
XLOC_014315 NA non-coding upstream 850608 45359277 ~ 45365727 (+)
XLOC_014314 NA non-coding upstream 1256637 44917099 ~ 44959698 (+)
XLOC_014331 NA non-coding downstream 204051 46423091 ~ 46438135 (+)
XLOC_014334 NA non-coding downstream 969490 47188530 ~ 47191501 (+)
XLOC_014337 CU138512.1 non-coding downstream 1087583 47306623 ~ 47306738 (+)
XLOC_014339 NA non-coding downstream 1118542 47337582 ~ 47338157 (+)
XLOC_014341 NA non-coding downstream 1219164 47438204 ~ 47448594 (+)

Expression


Co-expression Network