XLOC_014326 (vps28)



Basic Information


Item Value
gene id XLOC_014326
gene name vps28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46222428 ~ 46238624 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00028446
GTCAATATAAGGGTCATCATGTTTCATGGAATACCTGCATCTGGAGTGATGGGAGGAGCTCCTGCCAACAAGCCAGAACTGTATGAGGAAGTGAAGTTGTACAAAAATGCCAGAGAAAGGGAAAAGTATGACAACATGGCAGAGCTGTTTGCTGTTGTCAAAACACTCCAGGCCCTGGAAAAGGCCTACATTAAAGACTGCGTGACTCCAAATGAGTACACAGGAGCATGCTCCAGATTGCTTGTCCAGTATAAGGCTGCTTTCAAACAAGTCCAGGGGTCAGATGTGGGCTCCATCGACGACTTTTGTCGGAAATACAGGCTGGACTGTCCGCTGGCCATGGAGCGAATCAAAGAGGACCGACCGATCACCATTAAGGATGACAAGGGCAACCTGAATCGCTGCATTGCAGACATCGTTTCActTTTTATCACAGTAATGGACAAACTTCGACTTGAAATTCGTGCCATGGATGAGATCCAGCCTGACCTGAGAGAGCTGATGGAGACCATGAACAGGATGAGCAACATGCCTCCAGATTCAGAGGCCAAAGACAAAGTCAGCCTCTGGTTGACCACACTGAGCAGCATGTCTGCGTCTGATGAGCTGGACGACTCTCAGGTTCGCCAGATGCTCTTCGATCTGGAGTCTGCATACAACGCCTTCAATCGTTTCCTACACTCCTCCTAAACGCTCCGACCCTTTCAGAGCTCCTTTTCACCAGCTTTTAACATGTTGCCCTTGTTTCGGAAACATTGATCTGTTATATAGAAATCCCAATTAATGTACTGTTTACTAAAGCTTCTAATATTCAGTAAGGATTGTATCACTCTGACACTTGTTTTCTCCTTTATTTCTGTCACAATAGACTGACGTAACCAGTAGGCATATGCATTTAGTTCAGGGTGGGCTTTATAAGGATCAGTGTATTATAGAAAGATGTTAAATGAACATACTTTATGGATCACCTGATATATATAATACAGCAAGGATTGATTAGGAGTTGTCACTACTGGATTTTATTTGGCAATACACTACAGTATAGTTCAGTTAATTGATGTATTTActgacaaacaatgaacaatttaTAACAGTGTGTGCTCGTCTTATTCACATTAGTAAAACTACAGTTGTTCATGCACAGTTttggattttattaatgcattagtaagtgttaaactatgattaatacatgctgatttgttcatgtttgtaaatacattaactaatggagccttattgtaaagtgtgtccTTTTATTTTAAGCATATAAACCCATTTTGGTCGGCTTCAGACtttcttttttgttaaaatattatttcccACCGTATTTAATTGTGCATTTAAAGTACTTTAACATTTGCTGGTTGATAACCTTGACTTTTATATCAGATCTTGATTGAGAACTGTACTCTTTTTCTTGGCACGGTGTTGGTCTGTCTCTCTTCGGTATGTAATAagtcatatttattaaattaccattgtaaataaaatagttttgaaataaactacaTGGCTTTCAAACCT
>TCONS_00028447
aattTGTAGGTCATCATGTTTCATGGAATACCTGCATCTGGAGTGATGGGAGGAGCTCCTGCCAACAAGCCAGAACTGTATGAGGAAGTGAAGTTGTACAAAAATGCCAGAGAAAGGGAAAAGTATGACAACATGGCAGAGCTGTTTGCTGTTGTCAAAACACTCCAGGCCCTGGAAAAGGCCTACATTAAAGACTGCGTGACTCCAAATGAGTACACAGGAGCATGCTCCAGATTGCTTGTCCAGTATAAGGCTGCTTTCAAACAAGTCCAGGGGTCAGATGTGGGCTCCATCGACGACTTTTGTCGGAAATACAGGCTGGACTGTCCGCTGGCCATGGAGCGAATCAAAGAGGACCGACCGATCACCATTAAGGATGACAAGGGCAACCTGAATCGCTGCATTGCAGACATCGTTTCActTTTTATCACAGTAATGGACAAACTTCGACTTGAAATTCGTGCCATGGATGAGATCCAGCCTGACCTGAGAGAGCTGATGGAGACCATGAACAGGATGAGCAACATGCCTCCAGATTCAGAGGCCAAAGACAAAGTCAGCCTCTGGTTGACCACACTGAGCAGCATGTCTGCGTCTGATGAGCTGGACGACTCTCAGGTTCGCCAGATGCTCTTCGATCTGGAGTCTGCATACAACGCCTTCAATCGTTTCCTACACTCCTCCTAAACGCTCCGACCCTTTCAGAGCTCCTTTTCACCAGCTTTTAACATGTTGCCCTTGTTTCGGAAACATTGATCTGTTATATAGAAATCCCAATTAATGTACTGTTTACTAAAGCTTCTAATATTCAGTAAGGATTGTATCACTCTGACACTTGTTTTCTCCTTTATTTCTGTCACAATAGACTGACGTAACCAGTAGGCATATGCATTTAGTTCAGGGTGGGCTTTATAAGGATCAGTGTATTATAGAAAGATGTTAAATGAACATACTTTATGGATCACCTGATATATATAATACAGCAAGGATTGATTAGGAGTTGTCACTACTGGATTTTATTTGGCAATACACTACAGTATAGTTCAGTTAATTGATGTATTTActgacaaacaatgaacaatttaTAACAGTGTGTGCTCGTCTTATTCACATTAGTAAAACTACAGTTGTTCATGCACAGTTttggattttattaatgcattagtaagtgttaaactatgattaatacatgctgatttgttcatgtttgtaaatacattaactaatggagccttattgtaaagtgtgtccTTTTATTTTAAGCATATAAACCCATTTTGGTCGGCTTCAGACtttcttttttgttaaaatattatttcccACCGTATTTAATTGTGCATTTAAAGTACTTTAACATTTGCTGGTTGATAACCTTGACTTTTATATCAGATCTTGATTGAGAACTGTACTCTTTTTCTTGGCACGGTGTTGGTCTGTCTCTCTTCGGTATGTAATAagtcatatttattaaattaccattgtaaataaaatagttttgaaataaactacaTGGCTTTCAAACCT
>TCONS_00028448
GTTGACCACACTGAGCAGCATGTCTGCGTCTGATGAGCTGGACGACTCTCAGGTTCGCCAGATGCTCTTCGATCTGGAGTCTGCATACAACGCCTTCAATCGTTTCCTACACTCCTCCTAAACGCTCCGACCCTTTCAGAGCTCCTTTTCACCAGCTTTTAACATGTTGCCCTTGTTTCGGAAACATTGATCTGTTATATAGAAATCCCAATTAATGTACTGTTTACTAAAGCTTCTAATATTCAGTAAGGATTGTATCACTCTGACACTTGTTTTCTCCTTTATTTCTGTCACAATAGACTGACGTAACCAGTAGGCATATGCATTTAGTTCAGGGTGGGCTTTATAAGGATCAGTGTATTATAGAAAGATGTTAAATGAACATACTTTATGGATCACCTGATATATATAATACAGCAAGGATTGATTAGGAGTTGTCACTACTGGATTTTATTTGGCAATACACTACAGTATAGTTCAGTTAATTGATGTATTTActgacaaacaatgaacaatttaTAACAGTGTGTGCTCGTCTTATTCACATTAGTAAAACTACAGTTGTTCATGCACAGTTttggattttattaatgcattagtaagtgttaaactatgattaatacatgctgatttgttcatgtttgtaaatacattaactaatggagccttattgtaaagtgtgtccTTTTATTTTAAGCATATAAACCCATTTTGGTCGGCTTCAGACtttcttttttgttaaaatattatttcccACCGTATTTAATTGTGCATTTAAAGTACTTTAACATTTGCTGGTTGATAACCTTGACTTTTATATCAGATCTTGATTGAGAACTGTACTCTTTTTCTTGGCACGGTGTTGGTCTGTCTCTCTTCGGTATGTAATAagtcatatttattaaattaccattgtaaataaaatagttttgaaataaactacaTGGCTTTCAAACCTAA

Function


symbol description
vps28 Acts upstream of or within retina development in camera-type eye. Predicted to be located in endosome. Predicted to be part of ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).

GO:

id name namespace
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway biological_process
GO:0015031 protein transport biological_process
GO:0032509 endosome transport via multivesicular body sorting pathway biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005768 endosome cellular_component
GO:0000813 ESCRT I complex cellular_component
GO:0044877 protein-containing complex binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-1527 Acts upstream of or within retina development in camera-type eye. Predicted to be located in endosome. Predicted to be part of ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).

Ensembl:

ensembl_id ENSDARG00000103203

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00028446 False 1527 mRNA 0.40 10 46222428 46238622
TCONS_00028447 False 1524 mRNA 0.40 9 46222918 46238622
TCONS_00028448 True 960 mRNA 0.34 1 46237665 46238624

Neighbor


gene id symbol gene type direction distance location
XLOC_014325 NA coding upstream 3388 46216335 ~ 46219040 (+)
XLOC_014324 cap2 coding upstream 11524 46158078 ~ 46210904 (+)
XLOC_014323 rbm24a coding upstream 73451 46113828 ~ 46148977 (+)
XLOC_014322 stmnd1 coding upstream 121665 46095210 ~ 46100763 (+)
XLOC_014321 NA coding upstream 128776 46091317 ~ 46093652 (+)
XLOC_014327 mapk15 coding downstream 1547 46240171 ~ 46303622 (+)
XLOC_014328 rprd1a coding downstream 70929 46309553 ~ 46333810 (+)
XLOC_014329 slc30a8 coding downstream 104761 46343385 ~ 46362232 (+)
XLOC_014330 med30 coding downstream 133491 46372115 ~ 46411358 (+)
XLOC_014331 NA coding downstream 184467 46423091 ~ 46438135 (+)
XLOC_014317 NA non-coding upstream 494366 45727214 ~ 45728062 (+)
XLOC_014316 CT737154.1 non-coding upstream 713447 45508865 ~ 45508981 (+)
XLOC_014315 NA non-coding upstream 856701 45359277 ~ 45365727 (+)
XLOC_014334 NA non-coding downstream 949906 47188530 ~ 47191501 (+)
XLOC_014337 CU138512.1 non-coding downstream 1067999 47306623 ~ 47306738 (+)
XLOC_014339 NA non-coding downstream 1098958 47337582 ~ 47338157 (+)
XLOC_014341 NA non-coding downstream 1199580 47438204 ~ 47448594 (+)

Expression



Co-expression Network