XLOC_014328 (rprd1a)


Basic Information

Item Value
gene id XLOC_014328
gene name rprd1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 46309553 ~ 46333810 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028452
GCGGCTGACCGCGCATGCGCACTACGCGCCGTGTGTGGCGGAGTAGGGAATGTGTGTCTGTCGTGAGGAGTTATCCGTGTAAAATCCTCGATCTTCGGGTGTTTATGCGGACAAGTCGCCTTTTCCACACACCATTCACCTGTGACCGAAGATGTCCGTGTTCTCGGAGCCTGCGTTGGAGAAGAAACTATCAGAACTGAGTAACTCCCAGCAGAGCGTGCAGACGCTTTCTCTGTGGCTCATTCACCACAGAAAACACTCCAAAACCATCGTCAAAGTGTGGTACAGCGAGCTCAAGAAAGCTCAGGTGTCTCGTAAGCTGACATTTCTGTATCTTGCCAATGATGTCATACAGAACAGCAAGAGGAAAGGACCCGAGTTCACACAAGACTTTGCCCCAGTCATTGTTGATGCTTTCAAACACGTCTCCAGCGGAGGAGACGAGAGCTGTAAGAAACATCTAGGTCGAGTTTTGTCCATCTGGCAGGAGAGAGCCGTCTATGAGAACGACATACTGGACAAACTTGCAGACGTCTTGCAGGTGGAAAAGAAGGCCCAAAAAAGGCCTTATGAAGAGATTAAGGTGAACGTTGATGATTTCGCCTGCCAAAGCTCCCCCGCCGAACCTCCACAGACTGCAGATCTGATCCGGACGCTGCAGGAGCTGGAGAACGCAGCCTCGAGTGACGCCGCTCTCCGCAAGAGGATCTCCGCTCTTCCCCCAGAGGTGCAAGACACCTCGCTGTTGCACAAAGTTCAAGaTAAAGAGTCCGGAGAGCGTCTGTCTCGGCTGGTGGAGGAGGCCTGTATGCTGCTGGCGGATTATAGCGGACGGCTGGCGGCAGAAATCGATGACCGCAGGCAACTTACGCGCACGCTGGCCGTCTTTTTGCAGAGTCAGAGAGACGGTCTGGTCCAGAACGAGCAGAAACTAGAAgagtaCAAGCGTAAGCTGGCGCGGGTGTCGCAGGTACGGAAGGAGCTTCGATCTCGCCTCAACGGGCTGCCAGATCTGTCCCGGCTCCCGAACGTCACAGGTGGACACATGCGTCTGCCCTCGTCCGGTGATCTGTACAGCCCGTCTGATTGAGCAGGACTCTTGATCATCTTCACACTAACACTCTTTAATCTCATCCGGCCACTATAATATTAGTGGATGCGTCCGATATGCAGTCCGTGGCTGCTCGAGTGTTGCTGAGATAAAAACACCTCAGTTTGTCGTCCCTCAAATATCGCTCAAATGCATTGGGATCAGTGCAGACATTTAAGTGATTTGTTTCCTTTTAAAGCTTTGTTTTGGAAGCTTCCAGACagcatacattaaaataaacacgcCATATTTAAATGCACACTGCAAAAGATGCATTTCTTAGAGTTTTTCTAGTCTAagtatctaaatattcttaaatcaagaagctttttctttCAAAGCAAAAcgtattttgttgttttaagacATACTAtaacaaaataaagtgagtttttccattaaaacaagctaaataatcattttttaaacatttatttacctgCTTTTTGCTTTtacaaaaactacaacaaaaacaaaacaatgcaatgcAATACAATAACAATGCATATAAAACACAATACCTAAAAATACTACCTTATGACAGAACACAGAGGGACAAATGCACAGACAAGCAAAGTATAATTTGGCTGATCAAGTAATgcataaaaaaagtaattataaagtaACATTGTTCTTATATTgacaaaaacaaagcatttttctGTCATAATAGTTTggacacattattaaaaacattatagatTATGAATAGTACATATCAATTCCACTCGATctttattaaatatgttattgACAGAGATCACTAGCTTAGTttgcaagctaaataatcttatgtcaaaaggaaaagcaAGATTATTTATCACATTGACAGAGACA

Function

symbol description
rprd1a Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in mRNA 3'-end processing. Predicted to be part of RNA polymerase II, holoenzyme.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000104861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028452 True 1927 mRNA 0.44 7 46309553 46333810

Neighbor

gene id symbol gene type direction distance location
XLOC_014327 mapk15 coding upstream 5931 46240171 ~ 46303622 (+)
XLOC_014326 vps28 coding upstream 70929 46222428 ~ 46238624 (+)
XLOC_014325 NA coding upstream 90513 46216335 ~ 46219040 (+)
XLOC_014324 cap2 coding upstream 98649 46158078 ~ 46210904 (+)
XLOC_014323 rbm24a coding upstream 160576 46113828 ~ 46148977 (+)
XLOC_014329 slc30a8 coding downstream 9575 46343385 ~ 46362232 (+)
XLOC_014330 med30 coding downstream 38305 46372115 ~ 46411358 (+)
XLOC_014331 NA coding downstream 89281 46423091 ~ 46438135 (+)
XLOC_014332 AL953858.1 coding downstream 490913 46824723 ~ 46825683 (+)
XLOC_014333 si:ch211-229b6.1 coding downstream 801867 47135677 ~ 47137425 (+)
XLOC_014321 NA non-coding upstream 215901 46091317 ~ 46093652 (+)
XLOC_014317 NA non-coding upstream 581491 45727214 ~ 45728062 (+)
XLOC_014316 CT737154.1 non-coding upstream 800572 45508865 ~ 45508981 (+)
XLOC_014315 NA non-coding upstream 943826 45359277 ~ 45365727 (+)
XLOC_014334 NA non-coding downstream 854720 47188530 ~ 47191501 (+)
XLOC_014337 CU138512.1 non-coding downstream 972813 47306623 ~ 47306738 (+)
XLOC_014339 NA non-coding downstream 1003772 47337582 ~ 47338157 (+)
XLOC_014341 NA non-coding downstream 1104394 47438204 ~ 47448594 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location