XLOC_014340 (psmb2)


Basic Information

Item Value
gene id XLOC_014340
gene name psmb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47394270 ~ 47423628 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028465
ACGGCGGCTCGGCCTGACCACGCCCTCCAAGATAATCTCTCGCCGGAGAAAGCACGCCTCGAAGCGGCAGGTGCGTGTGCCAGGCACCGGGGTCACGGGGCCGACGGAGGTGGGGGAGCTCGCCATGTCAAATCCTCCCAGCTGCCGATTATGACAAGATGTTCAAGCTGAGTGAGAAGATCCTGCTGCTGTGTGTGGGTGAAGCCGGAGACACCGTACAGTTTGCAGAATACATCCAGAAGAACGTCCAGCTTTACAAAATGAGGAACGGATATGAGCTCAGTCCTGCAGCCGCTGCAAACTTCACCAGGAAAAACCTGGCAGATTATCTGCGCAGTCGGACTCCATATCATGTGAATCTGCTGCTGGCGGGGTACGATGAGACCGATGGACCCGGCCTTTACTACATGGATTACCTGTCAGCTCTCGCCAAAGCCCCGTTCGCCGCTCACGGATACGGAGCTTTCCTCACGCTCTCCATCCTGGACCGATACTACAGACCAGATCTGACCCGTGAGGAGGCTGTGGATCTGCTCAAGAAGTGTTTAGAGGAgCTCAACAAGCGCTTCATTCTGAATCTTCCTTCGTTCACCGTTCGTCTGATCGATAAAGACGGCATTCACGACATGGAGAAGCTTCCTGTGGGCCGCAAATGAGCCGCTGCTGTTTTTCACTCTCTTTTGTACTAAAATAACCCTCTGTGCTCTAATAAAAACGTTGACCCCA
>TCONS_00028466
CGCGCCGCCGCCGCTCTTCCATTCTGCTTTTGCTGTGTAATATCTGACAGAGCTGCACTGCTAGTCCACTGAGTGAATAGAGTTTGTTAAATCCACTTTAAACTCAGTCCGCAGTATGGAGTATTTGATCGGGATTCAGGGACCAGACTTTGTGCTGGTGGCGGCTGATAACGTCGCGGCGAGCAGTATAATCCAGATGAAGCACGATTATGACAAGATGTTCAAGCTGAGTGAGAAGATCCTGCTGCTGTGTGTGGGTGAAGCCGGAGACACCGTACAGTTTGCAGAATACATCCAGAAGAACGTCCAGCTTTACAAAATGAGGAACGGATATGAGCTCAGTCCTGCAGCCGCTGCAAACTTCACCAGGAAAAACCTGGCAGATTATCTGCGCAGTCGGACTCCATATCATGTGAATCTGCTGCTGGCGGGGTACGATGAGACCGATGGACCCGGCCTTTACTACATGGATTACCTGTCAGCTCTCGCCAAAGCCCCGTTCGCCGCTCACGGATACGGAGCTTTCCTCACGCTCTCCATCCTGGACCGATACTACAGACCAGATCTGACCCGTGAGGAGGCTGTGGATCTGCTCAAGAAGTGTTTAGAGGAgCTCAACAAGCGCTTCATTCTGAATCTTCCTTCGTTCACCGTTCGTCTGATCGATAAAGACGGCATTCACGACATGGAGAAGCTTCCTGTGGGCCGCAAATGAGCCGCTGCTGTTTTTCACTCTCTTTTGTACTAAAATAACCCTCTGTGCTCTAATAAAAACGTTGACCCCA
>TCONS_00028467
tttaggatcagcagataataccttgacttctagttgttgatttggtgtcagaagtgtctctatgaaaggtgaaggcctctagattttgctgatttgagctcaataaatctgatcatgtcttgatgttgactgatttgatgaggacagtgcgctctgactctgctcagactaaagtgtcatcactgaacagaaataatgtccagtatagaatataaagtactgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcacatcactgatgaataaagtcatctggaatgaagaagaaagcgttcagcaggatcccagagttcatcaagattcaacTTCAGCACCTCCATCATCTTACCctagatatgctcaataatgttcatgtctggtgactgggctggccaatcctggagcagcttgaccttctctgctttcaggagctttgatgtggaggctgaagtatgagcaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgatcatcacTGAAATGCGTTCTCTGTGAATGAGCCCTAATGCAGGTTTTAATTGATTGAATCTTCTCATTTCATCATTTCATTAACCTTTGTGGTGTTTCTCTCAGATCTGACCCGTGAGGAGGCTGTGGATCTGCTCAAGAAGTGTTTAGAGGAgCTCAACAAGCGCTTCATTCTGAATCTTCCTTCGTTCACCGTTCGTCTGATCGATAAAGACGGCATTCACGACATGGAGAAGCTTCCTGTGGGCCGCAAATGAGCCGCTGCTGTTTTTCACTCTCTTTTGTACTAAAATAACCCTCTGTGCTCTAATAAAAACGTTGACCCC

Function

symbol description
psmb2 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB2 (proteasome 20S subunit beta 2).

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-040718-353 Predicted to enable peptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMB2 (proteasome 20S subunit beta 2).

Ensembl:

ensembl_id ENSDARG00000031511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028465 False 726 mRNA 0.54 6 47394270 47423628
TCONS_00028466 False 785 mRNA 0.50 6 47405867 47423628
TCONS_00028467 True 932 lncRNA 0.44 2 47421060 47423627

Neighbor

gene id symbol gene type direction distance location
XLOC_014339 NA coding upstream 56113 47337582 ~ 47338157 (+)
XLOC_014338 ext1c coding upstream 57862 47311020 ~ 47336408 (+)
XLOC_014336 tpmt.2 coding upstream 84887 47299166 ~ 47309383 (+)
XLOC_014337 CU138512.1 coding upstream 87532 47306623 ~ 47306738 (+)
XLOC_014335 tpmt.1 coding upstream 95613 47290287 ~ 47298657 (+)
XLOC_014341 NA coding downstream 14576 47438204 ~ 47448594 (+)
XLOC_014342 zgc:114119 coding downstream 53280 47476908 ~ 47481618 (+)
XLOC_014343 CU695215.3 coding downstream 78953 47502581 ~ 47523302 (+)
XLOC_014344 CU695215.2 coding downstream 150987 47574615 ~ 47574823 (+)
XLOC_014345 NA coding downstream 166401 47590029 ~ 47591236 (+)
XLOC_014334 NA non-coding upstream 202769 47188530 ~ 47191501 (+)
XLOC_014331 NA non-coding upstream 956135 46423091 ~ 46438135 (+)
XLOC_014325 NA non-coding upstream 1175230 46216335 ~ 46219040 (+)
XLOC_014346 NA non-coding downstream 359464 47783092 ~ 47787275 (+)
XLOC_014347 NA non-coding downstream 374261 47797889 ~ 47800811 (+)

Expression


Co-expression Network