XLOC_014349


Basic Information

Item Value
gene id XLOC_014349
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47907150 ~ 47917554 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029739
ATGCATTCATATGAAGAAATGTATTGTTTACTTTTTCACCTGTCCTCAAGGTCTGCCAAGTACCAGGCTTGTATTTTAGAATCCACTACTCCTCCAGATCAAACCACAGCACCCCAGCAGGACACAAGCCCTCCACCAGAATCATCTCTGGAGAACCAGACCTCCATCACACCAGACCCAGCCTCCAGCACACACCAAGATGGTCCCGCTAATGATGGAGAAGCTCAGGTACATGGTGAAATAATCACTGACAAACCCAATCCTGAGGATGAAGAGAAGAACAGTCCCATTGAGGAGAAAACAACTGAGGGACATCCAGAGCAAGAAGAGCAGCAGGTCTCGGTGGATGCAGCCCAGACTGAACCTCAGGTGCTCAAACCTCGGAAGGATAAACTGGCCAGATTGAGGGAGCTTGGTCTGGATCCTCCTCCTGTGGTGAAGTTGTCCGCAGATGAAGGGGCTTTTGTCCAGTTGGAGGCGCCTCAGGAAAACCAAGCTCTGAAAGCACTACAGGAGCGCTTCATGAAGCACTTCCAGCCCGCACCTCGTCCCAAACGCGAGCGCACATTACAGCTTAATGTGGTGAGGAAAGACAGCAGTTCATCAGGACAGGAGGAGCTGCACTCTGAATCCATCACAATCACTGTCAAGGAGGGAGAAGATGAGCCAGCCAATGTCAAACCAGGTGAGAAACTGGTGCTGTTGAAGTCTCGTTTGCAGCAAGCCATGGCCATCCGCAGGAAAGAGGAGCGAGAGAGAAGAGCTGCTCTTCATCGCCTCGATAATGAAGActgtgaggaagaggaggaagaagagatGACCGAGTCAGAGGATGAAGAGGGTGTTGATGAATTGCTGGGAGATGGTAATGGTGATGATGAGGAAGAAGAGGAAGCGATAGACAGAGAGGAAGCAGAAGATGAAGTTTCTGTGAAAACCTGCCCATCTCCAGGCTTCAAGAGTCCGTCTCCGACTCCAGCAGACACTGACGGCACATTGATGCTGTTTGCTGGAAGCTCCTGTTCCCGCACAGGGGATGGTGTGAGAAGAATAGGAGCAGCTGGCCATGAAGCTGACAATAAAATGGAGGAGGACGACACGCTTTCGTTGGCTAAGGACAGCAGTCATAACAGTAGCTTTGAGCTGATGGGCTCCATGATCACCTCGTATCAGCCGAACAGAGCTGCAAGTCGAGGCCTGTCCAGCAGTGCTTTCCGCTCCCCGTCTCCCTGCCTCTTTAGATCCAGCTTTCTGGGCTCGGCCTCAAAGAGCTCTGGTAAGATGTCCGAGCCGTCCCTGTCTCTGCCTGTGGAGGATTCCCAGGACCTCTATGCTCCGTCATCCCCCAGTGAATCTGCTCTCCCTCCGGCTGGAGACTCTCAGGGACGCTTCTCCCTGGAGGACGACACTCAATCACAACTACTGGACGCAGACGGATTCCTGAATGTGGGTCCTCGCGGCGGTCCCTCACGCTCGCACAAACGCCAGCTCATACTCGACAGCCTGGATGAAAACGCTATGGATGCTAACATGGGAGAGCTTCTGGGGCTTTGCTCGGGGGGCTTCGGCACGGGGCAGACCCAGCCCGGAGACTCTCAGCCTGGGGCAGAGGATGAGCTGCTGGGGTTGTGCTCTGGAGCTTTTACCACACAGCCTGGAgagcctgctgctgctgctgttgttgatcTCAGGGAGAAAAACAACACTTCAGAGGCAGAAGAGCAGAGAGAGGAGAGCCGTGGAGGATCTGAGGCGGATATGGACCAGCTGCTGGCGCTCTGCTCCGGAAAGTTCACAGGAAGCCCATCTGCTTCGTCACTAAGATCAGTCTCCAGTCCTGCCTTTGAAAAGACGTCTGAAACAAACAGGTACTAAACTAAATTCATCAACTTGTAAATGCGTTTTCCTAATGTGTTATTGGATTTGTCTAAACCAAAAAATGTTGG
>TCONS_00028473
ATGAAAATTTATATTCAAACTATTTTAGTTTTATGCAAAGCACATCAGTGCCTAGTCTtttctttcattaaaaaattgAATGGAAATgccatggaaattcagctttttgtCATTGAATGTCAGGGAAAATGGCTTCGAGTgaaaatttttaatgttttaattttcttttgcacTTTTCAACAATTTATGATTGATGATTGTGTGTCTGTTTCAGCTCTGAAAGCACTACAGGAGCGCTTCATGAAGCACTTCCAGCCCGCACCTCGTCCCAAACGCGAGCGCACATTACAGCTTAATGTGGTGAGGAAAGACAGCAGTTCATCAGGACAGGAGGAGCTGCACTCTGAATCCATCACAATCACTGTCAAGGAGGGAGAAGATGAGCCAGCCAATGTCAAACCAGGTGAGAAACTGGTGCTGTTGAAGTCTCGTTTGCAGCAAGCCATGGCCATCCGCAGGAAAGAGGAGCGAGAGAGAAGAGCTGCTCTTCATCGCCTCGATAATGAAGActgtgaggaagaggaggaagaagagatGACCGAGTCAGAGGATGAAGAGGGTGTTGATGAATTGCTGGGAGATGGTAATGGTGATGATGAGGAAGAAGAGGAAGCGATAGACAGAGAGGAAGCAGAAGATGAAGTTTCTGTGAAAACCTGCCCATCTCCAGGCTTCAAGAGTCCGTCTCCGACTCCAGCAGACACTGACGGCACATTGATGCTGTTTGCTGGAAGCTCCTGTTCCCGCACAGGGGATGGTGTGAGAAGAATAGGAGCAGCTGGCCATGAAGCTGACAATAAAATGGAGGAGGACGACACGCTTTCGTTGGCTAAGGACAGCAGTCATAACAGTAGCTTTGAGCTGATGGGCTCCATGATCACCTCGTATCAGCCGAACAGAGCTGCAAGTCGAGGCCTGTCCAGCAGTGCTTTCCGCTCCCCGTCTCCCTGCCTCTTTAGATCCAGCTTTCTGGGCTCGGCCTCAAAGAGCTCTGGTAAGATGTCCGAGCCGTCCCTGTCTCTGCCTGTGGAGGATTCCCAGGACCTCTATGCTCCGTCATCCCCCAGTGAATCTGCTCTCCCTCCGGCTGGAGACTCTCAGGGACGCTTCTCCCTGGAGGACGACACTCAATCACAACTACTGGACGCAGACGGATTCCTGAATGTGGGTCCTCGCGGCGGTCCCTCACGCTCGCACAAACGCCAGCTCATACTCGACAGCCTGGATGAAAACGCTATGGATGCTAACATGGGAGAGCTTCTGGGGCTTTGCTCGGGGGGCTTCGGCACGGGGCAGACCCAGCCCGGAGACTCTCAGCCTGGGGCAGAGGATGAGCTGCTGGGGTTGTGCTCTGGAGCTTTTACCACACAGCCTGGAgagcctgctgctgctgctgttgttgatcTCAGGGAGAAAAACAACACTTCAGAGGCAGAAGAGCAGAGAGAGGAGAGCCGTGGAGGATCTGAGGCGGATATGGACCAGCTGCTGGCGCTCTGCTCCGGAAAGTTCACAGGAAGCCCATCTGCTTCGTCACTAAGATCAGTCTCCAGTCCTGCCTTTGAAAAGACGTCTGAAACAAACAGGTACTAAACTAAATTCATCAACTTGTAAATGCGTTTTCCTAATGTGTTATTGGATTTGTCTAAACCAAAAAATGTTGGTACAGTTTTTGATACAGTAGTGCAGATTACTCAGTTGAGTCCCAAactgtagtatgttgaaaagaatATGCCTAAGGATCCTGGATGCTCTACTTCagcggtgtccaaacttggtccagaAGAgacggtgtcctgctgagtttagctccaacatgctTCAACACATCTGCAAGGACGTTTCTTGTACATCtcgtaagagcttgattagctgactcaggtgtgtttgattagggttggagctaaactctccagggcactggccctccagaacggagtttggacacccctgctctactaTTTCTGGTGGAAATTCAAAGTGTGGAACAGTCCATACTCAAACCACTAATATAACCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttttttttttttttttttttttttatatacatatatatatatatactcatatataaaaaaaaaaaaaaaaaaaaataaataaaagaaagagagagacagagacacacacacagactctgtgtgtgtgtatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:0022402 cell cycle process biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006996 organelle organization biological_process
GO:0006997 nucleus organization biological_process
GO:0007049 cell cycle biological_process
GO:0010256 endomembrane system organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0071786 endoplasmic reticulum tubular network organization biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117786

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029739 False 1946 lncRNA 0.53 8 47907150 47916939
TCONS_00028473 True 2279 lncRNA 0.45 7 47909148 47917554

Neighbor

gene id symbol gene type direction distance location
XLOC_014348 CABZ01005379.1 coding upstream 63498 47838603 ~ 47843652 (+)
XLOC_014347 NA coding upstream 106339 47797889 ~ 47800811 (+)
XLOC_014346 NA coding upstream 119875 47783092 ~ 47787275 (+)
XLOC_014345 NA coding upstream 315914 47590029 ~ 47591236 (+)
XLOC_014344 CU695215.2 coding upstream 332327 47574615 ~ 47574823 (+)
XLOC_014350 NA coding downstream 7116 47924670 ~ 47927811 (+)
XLOC_014351 CU929079.1 coding downstream 100452 48018006 ~ 48018346 (+)
XLOC_014352 UBE2M coding downstream 100910 48018464 ~ 48023442 (+)
XLOC_014353 kpnb1 coding downstream 106903 48024457 ~ 48037702 (+)
XLOC_014354 CU929079.2 coding downstream 115745 48033299 ~ 48033440 (+)
XLOC_014362 NA non-coding downstream 269627 48187181 ~ 48191116 (+)
XLOC_014364 NA non-coding downstream 373193 48290747 ~ 48308400 (+)

Expression


Co-expression Network