XLOC_014350


Basic Information

Item Value
gene id XLOC_014350
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 47924670 ~ 47927811 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029741
TTTCAGAGGAAATACGTTTCTCATACCTGCGATGTTTGTTTGTGTCTGCAGGTGAAGAGAGGATCATTGCTCAGTCAGCCGCGGGCCGTGCTGCAGAAATTAGCCGGTATTTCTGACAGCAATCCTTTGGCTCCTCGTAACTCGCGCGGGTTCCTCTTCCAAGACGCTGTCGCCAGAGAAAGAGACGTCTGCTTCTCAGAAACCCAAAACACAGGTTAAGAAAAGAGGCCAGCTGGAGTCGGTCAGTCCTGCAGCGAAGCGTCCGTGTCTCAGCAGCGTCCGCAGACCCGCAGCACCAGCGCGCAGTATATTCAGCTTTCTGGAGAACTGAAGACTCTCCGCATTCAGtgttattaatgttaattaaacGTGTCCATACGAAATGCTCTAATGATGCGGCAGGGGTGAAGCTTTGGCTCGGCTTCTTTTACACTGCTTGTATCATGTAAATATTGTGATTTTTCTCCCTAAgtgctgtatttttatttgtttttatgaaattgtaaattaaagtgtattttaaatcATCAGCGCTTCCTTCAGTCGTCATTAAATTCAGCGCTCGACTTCACTGATGTTAACCACACTGATGACCTGCAGCCTGTGGTGAGTATCTGATTTACTTAAATATTCTAGTTTTTTCACTCATTTTGTTTCGGCTTAGCCTCtcatttatctggggtcgccacagcggaatgaaccgccaactagtccagcataaatttacacagcggatgcccttccaaccacaactcaatactgggaaacacccatacacactcacacacactcatgcactacagtttagttgatcagttcccctatagcgcatgtgtttggactgtgggaaaccggagcacccaacacagggagaacatgcaaactccacacagaaacaccaactgacctagtcaaggctcgaaccagcaaccttcttgctgtgaggacacagtgctaaccactaagttaCCGTGTCACTAAGatgtaaacatttattctttAAAACGTTACATTCCAaaaaatgttgggtcaaatatgaaagGGTTAAAacgtaatttaattttaattgaatatata
>TCONS_00029740
TTTCAGAGGAAATACGTTTCTCATACCTGCGATGTTTGTTTGTGTCTGCAGGTGAAGAGAGGATCATTGCTCAGTCAGCCGCGGGCCGTGCTGCAGAAATTAGCCGGTATTTCTGACAGCAATCCTTTGGCTCCTCGTAACTCGCGCGGGTTCCTCTTCCAAGACGCTGTCGCCAGAGAAAGAGACGTCTGCTTCTCAGAAACCCAAAACACAGGTTAAGAAAAGAGGCCAGCTGGAGTCGGTCAGTCCTGCAGCGAAGCGTCCGTGTCTCAGCAGCGTCCGCAGACCCGCAGCACCAGCGCGCAGTATATTCAGCTTTCTGGAGAACTGAAGACTCTCCGCATTCAGtgttattaatgttaattaaacGTGTCCATACGAAATGCTCTAATGATGCGGCAGGGGTGAAGCTTTGGCTCGGCTTCTTTTACACTGCTTGTATCATCGCTTCCTTCAGTCGTCATTAAATTCAGCGCTCGACTTCACTGATGTTAACCACACTGATGACCTGCAGCCTGTGGTGAGTATCTGATTTACTTAAATATTCTAGTTTTTTCACTCATTTTGTTTCGGCTTAGCCTCtcatttatctggggtcgccacagcggaatgaaccgccaactagtccagcataaatttacacagcggatgcccttccaaccacaactcaatactgggaaacacccatacacactcacacacactcatgcactacagtttagttgatcagttcccctatagcgcatgtgtttggactgtgggaaaccggagcacccaacacagggagaacatgcaaactccacacagaaacaccaactgacctagtcaaggctcgaaccagcaaccttcttgctgtgaggacacagtgctaaccactaagttaCCGTGTCACTAAGatgtaaacatttattctttAAAACGTTACATTCCAaaaaatgttgggtcaaatatgaaagGGTTAAAacgtaatttaattttaattgaatatata

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:0022402 cell cycle process biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0010638 positive regulation of organelle organization biological_process
GO:0006996 organelle organization biological_process
GO:0007049 cell cycle biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process
GO:0016043 cellular component organization biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029741 False 1077 lncRNA 0.44 2 47924670 47927811
TCONS_00029740 True 991 lncRNA 0.46 3 47924670 47927811

Neighbor

gene id symbol gene type direction distance location
XLOC_014349 NA coding upstream 7116 47907150 ~ 47917554 (+)
XLOC_014348 CABZ01005379.1 coding upstream 81018 47838603 ~ 47843652 (+)
XLOC_014347 NA coding upstream 123859 47797889 ~ 47800811 (+)
XLOC_014346 NA coding upstream 137395 47783092 ~ 47787275 (+)
XLOC_014345 NA coding upstream 333434 47590029 ~ 47591236 (+)
XLOC_014351 CU929079.1 coding downstream 90195 48018006 ~ 48018346 (+)
XLOC_014352 UBE2M coding downstream 90653 48018464 ~ 48023442 (+)
XLOC_014353 kpnb1 coding downstream 96646 48024457 ~ 48037702 (+)
XLOC_014354 CU929079.2 coding downstream 105488 48033299 ~ 48033440 (+)
XLOC_014355 psmd3 coding downstream 121391 48049202 ~ 48059334 (+)
XLOC_014362 NA non-coding downstream 259370 48187181 ~ 48191116 (+)
XLOC_014364 NA non-coding downstream 362936 48290747 ~ 48308400 (+)
XLOC_014366 NA non-coding downstream 438641 48366452 ~ 48367654 (+)

Expression


Co-expression Network