XLOC_014364


Basic Information

Item Value
gene id XLOC_014364
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 48290747 ~ 48308400 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029742
CATTCCTGAATGAAAGCTTCGAGTTTTCCTCCTCACTGTGAGTTTGACTGAGTCTCCAGCAGATCCACACACTCTGGGAGAAGTGAAGGCTTCCTCTTTACACTACTTCCTGATCGGCTGTCTATAATGGATGCAGAGAGTAACCCTCAGGAGACGTCTCCGCTCGCAGCTGAGGGCATGTGGTGGGGCTCTCTGGGCTCTGTGCGGCCCTTCCCAAACTTCAGACCTGAGAGAGACGTTCTAGTCCTTCACGATGCTCTGGAGAAGAAAGATGTGAGCAGTGTTGTGAGGACTCTGAGCAATCGCAGTAACGCTCAGAGAAGAGCTCTGGCCAGAGTCTATAAGAGCGTCACACAGAagatcacacacgcacacacacacacacacacacacacacacacacttaatataatatacacaaaatataatataatataataaaatataatgatataataataatatcattttgtataatataatataataataatataatatgctataatataataaattatagtatattattatataatagcatgatataataatgatataattttgtatactaatataatacaatataatataatacaataacataatgtaatttaatataatataataaatataataatataatatactataataatgtaatttaatattatataattgaatataatataatataacgtaatgtaatgtaataaaataatataatgtaatttaatattataatataatataataatatgatgtaatgtaatataatataatgtaatataatata
>TCONS_00028495
GAGTTTGACTGAGTCTCCAGCAGATCCACACACTCTGGGAGAAGTGAAGGCTTCCTCTTTACACTACTTCCTGATCGGCTGTCTATAATGGATGCAGAGAGTAACCCTCAGGAGACGTCTCCGCTCGCAGCTGAGGGCATGTGGTGGGGCTCTCTGGGCTCTGTGCGGCCCTTCCCAAACTTCAGACCTGAGAGAGACGTTCTAGTCCTTCACGATGCTCTGGAGAAGAAAGATGTGAGCAGTGTTGTGAGGACTCTGAGCAATCGCAGTAACGCTCAGAGAAGAGCTCTGGCCAGAGTCTATAAGAGCGTCACACAGAagGATCTGGATGTGGGCCTGAAGAAGCTTCTCTCTGGTGATCTTCAGTCTCTGGTTCTCGGTCTGATGTTGAGCCCAGAGCAGTTTGACGCGCATCGCCTGCGGAAAGCcatggagggtgcTGGAACAGATGAAGACACACTTCTGGAGATTCTGTGCATCAGAACGCCACAGCAGCTCTCCCGCATCAGAGCGTCATACACACACGagtTTCAGCGGGATCTGGAGAAGGATCTGCTCAGTGAAACCAGTGGAGATTTCTCCAGACTCATCACAGCTCTGCTGAAGAAGGAGAACGAGACGGGGATTATTGAGCAGGACACAGcaGCTTTATCTGAGGAGCTGAAGAACAAGAAACCTGCAGCTGAAGTCTGGATCCGGACCCTGACCTCCAGACACCCTGAGCACCTGAGCGCAGtgctgGATGAGCTGGAGGTTGAGAGAGGACAGACAGTGCAAGAAGCTCTGGATGGACACTTCAGAGGATTAATGTCTGCTGACCTCAGGAAGGGCCTCAAGACCCTGGTGTGCACTATCCAGGACCCATATCTGTACTTGGCTCAGCGCATCCAAACTATGAAGtttgcagTGGTTCAGGGTGTGATTGTGTCTCACAGTGAAGAGGATCTGCTGAGGGTCAGAGTCGCTTACAAGAAGACCAGCGGAAGCTCACTATACACTGCCTTACAgAAGCAGTTTAAAGCTGAGCTCCTGCAGGGTTTGTTGGCTATTTGTCGAGCTGAAGATTAAAGGTGCTCTACACATCACTGATACTCAACATGATCATTATAATATCACTGATAATAAAAGATGATCATTATAATATCACTGATACTCAACATGCGTGTGTTTACAGTTCCTCTACATTGGCTGCGGTTTATGATCAATGCATTAATAAAAGGTCACTGTTTTGCAGAACTGACCTTTATCAAGAGGGGGAAAAGAAAACACGCTAAAAACTCATTATAATGCTGATTTTAATCATTATGGACACAAATTGTGCAAATAATCTGAAAATTTAAGCCACCAGTAAACTTTAAtgtttgaaaatattttgtatttgtttccacctaagtgattgattgattgattgattgattgattcattcattcattcattgattcattgattcattcattcattcattcattcattcattcattctaataGTAGGATAAAGCAGTCagttgtcattttatttgtgtatttttcaaggtttatttaatgtgatttttatgATGAACCTGCAGTGAAATGATTGTTATAATGCTGAAAATGTTCTGCTACTGTGACTTAGATACCCATAAAACCAAATGTGTCATCAAAACAGCCCAGTAAATGTACATGTTTACCTTCTCAACTC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0043236 laminin binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041010-152 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Orthologous to human ANXA9 (annexin A9).

Ensembl:

ensembl_id ENSDARG00000100104

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029742 False 796 lncRNA 0.30 4 48290747 48293424
TCONS_00028495 True 1682 mRNA 0.44 13 48290786 48308400

Neighbor

gene id symbol gene type direction distance location
XLOC_014363 CU693379.1 coding upstream 3806 48251273 ~ 48286941 (+)
XLOC_014362 NA coding upstream 99631 48187181 ~ 48191116 (+)
XLOC_014361 prdm1b coding upstream 104523 48164242 ~ 48186224 (+)
XLOC_014360 btr30 coding upstream 145845 48141623 ~ 48144902 (+)
XLOC_014359 nme2b.1 coding upstream 170462 48117388 ~ 48120285 (+)
XLOC_014365 sgo1 coding downstream 43224 48351624 ~ 48363423 (+)
XLOC_014366 NA coding downstream 58052 48366452 ~ 48367654 (+)
XLOC_014367 abhd5b coding downstream 64046 48372446 ~ 48378270 (+)
XLOC_014368 topaz1 coding downstream 80899 48389299 ~ 48408106 (+)
XLOC_014369 si:ch1073-376c22.1 coding downstream 101795 48410195 ~ 48416755 (+)
XLOC_014354 CU929079.2 non-coding upstream 257307 48033299 ~ 48033440 (+)
XLOC_014351 CU929079.1 non-coding upstream 272401 48018006 ~ 48018346 (+)
XLOC_014350 NA non-coding upstream 362936 47924670 ~ 47927811 (+)
XLOC_014349 NA non-coding upstream 373193 47907150 ~ 47917554 (+)

Expression


Co-expression Network