XLOC_014454 (tmem170b)


Basic Information

Item Value
gene id XLOC_014454
gene name tmem170b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 3539601 ~ 3574060 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028613
tatgtgtgtgtgtgtgtgtgtgaatgtgtgtgtgtggatgtcagCCGTACCCATCATGGCCCCTGAGCTGATGAGACGGACCGGCGCTCTGCCATCCTCCTCCAGCGAGCAGCGGCGCCGGTGAAGAGCCTCCATGTGTCCTCCATCCTCGGGCAGATTTCTGAGCAGAAGGGCCGCGCTCCAGCCGCCCGGCGCGAACATGAACAAGGATTACTCCATTAATCTGTCGGTGCAGCAAGTGCTCAGCCTGTGGGTCCAGGGCGAGGCGACCCTCAAGCACTTCACAGagatgTGGTATTGGGTGTTCCTGTGGTGTCTGTTCTCGTCTCTGTTTGTTCACAGTGCCGTGGGTCTGCTGATGTGTGTGACTCTGCAGCGTCATAAAAGAGGACGCCTCATCACACTGGTGCTCATCAGCGTGGGCTTCCTGGCCTCTCTGGGCGGAGGAGTCATCACCAGTGCGGCGGTGGCAGTTGTGTACCGTGTAGCAGGGAAGGACATGGCTCCTCTTGAAGCGCTGGTGTATGGAGTAGGACAGACTGCTTTAACCGTCATCATCTCATTCTCAAGGATCCTGGCCACTCTCTGATTGGATGTAAAGCATCAATAACTGAGACACCAAACAGCTAGTCATCCAATAGAAGAGCCAGGTTTGAGGTGAGTCGAGTAAAACCGCAGAAATGTGTTTTGGGATGGACTACAAATTAACTTTGGGGAATGAAGAACTGAACATTTCAATAAGCAAAAACAGCAATGACTGAAACTCGATCAACGTGCCAATTGCCTCCGTGGAGGATTGAGATGAATCTTGGGGTATCATGTTCATCTTTTCTTAAAGacgttttgttttgcttttgcacATTCAGCTTTATGTAAAATGACTGGTGCTGGAGACGAGATGCCAACATCCTCAAATACCTTTTCTATATGTCTGTTTGTTCaattatggacccttttcacatttccgagTTTCTCGATTGTCGTAGTTGGGTAAACATATGattcattcacactagcagcgactttgttgCTGCCTGTCGCTCTTggtggcgacctgctgcaaacacaggtctgtgtaggtctacagcacggagaatacaaccggcctctgacCGAGCTGAATGGATCACATGAGCTTTAcaggtgctcctattggctgtcgctcaagaaagttgcACCTTATTttcataaagttgaaggattcgcAATTTTGTTCACGTAGATGGAGGTTGCCGGAAGTCGCTTGCTCTCTGTTAATACGCTTGTCGCTTTGCCACTGCGAGTCgctcatagtgtgaatgaggctttattCTGTGTTCACACCAAAGTCATGCTATTCGCGC

Function

symbol description
tmem170b Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM170B (transmembrane protein 170B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-331 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM170B (transmembrane protein 170B).

Ensembl:

ensembl_id ENSDARG00000071205

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028613 True 1343 mRNA 0.50 3 3539601 3574060

Neighbor

gene id symbol gene type direction distance location
XLOC_014453 hivep1 coding downstream 50741 3383025 ~ 3488860 (-)
XLOC_014452 edn1 coding downstream 158179 3376430 ~ 3381422 (-)
XLOC_014451 si:ch211-133n4.9 coding downstream 235606 3300795 ~ 3303995 (-)
XLOC_014450 si:ch211-133n4.7 coding downstream 241249 3290098 ~ 3298352 (-)
XLOC_014449 si:ch211-133n4.10 coding downstream 252208 3285305 ~ 3287393 (-)
XLOC_014455 NA coding upstream 27964 3602024 ~ 3714913 (-)
XLOC_014456 smim13 coding upstream 143928 3717988 ~ 3726781 (-)
XLOC_014457 btr22 coding upstream 154948 3729008 ~ 3790595 (-)
XLOC_014458 btr21 coding upstream 173000 3747060 ~ 3759142 (-)
XLOC_014459 CT030005.2 coding upstream 186118 3760178 ~ 3761403 (-)
XLOC_014711 CR382300.3 misc upstream 16154630 19728690 ~ 19728755 (-)
XLOC_014437 NA non-coding downstream 619945 2916941 ~ 2919656 (-)
XLOC_014430 NA non-coding downstream 767913 2673751 ~ 2771688 (-)
XLOC_014434 NA non-coding downstream 777446 2756239 ~ 2762155 (-)
XLOC_014432 NA non-coding downstream 802566 2727176 ~ 2737035 (-)
XLOC_014428 NA non-coding downstream 1090994 2432847 ~ 2448607 (-)
XLOC_014474 CU570886.1 non-coding upstream 630185 4204245 ~ 4204359 (-)
XLOC_014475 NA non-coding upstream 872693 4446753 ~ 4449906 (-)
XLOC_014476 CT583670.1 non-coding upstream 907123 4481183 ~ 4481297 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G451629 NA non-coding CI01000319 null 3070098 ~ 3070288 (+)
rainbow trout (Oncorhynchus mykiss) G457789 NA non-coding NC_048569.1 CM023223.2 93581287 ~ 93581578 (-)