XLOC_014477


Basic Information

Item Value
gene id XLOC_014477
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4538801 ~ 4560795 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029750
attttaatgATGTGCTGAGTGAACTCTTGTCAGATTACCTTCTATTGGCCCCGCCTCCTTCCCTACGGGCCTATCAGAACCAATCTTTACTTGATTGACAGGTATGAGTGGTTTATGTGGCTCTGTGATGGTACTCAGCGGGAAACGCTCTGGTGACTTATTATCCGTCTCATCCCTCCAACAAACTTTCGCCTTTCCCGGATACACCCCTTCAGGCCTACAACCCGCAGCTTTGCCCTCATGAGCGCTTTTAATTTTCTGCCGCTGAGCCTCTCTGACCTCCAGGGGGAGCTCTAGTGGAGCGAGTTTCACAGGGCGCCGCGGAGGCAGGTTTTCagcctctttttctctctctggaGCTCGACTAATGTTATTACCCTGTTCCTGAAtagaggaggatgaggaggaaaAAGAAGAGGAGGACGAAGAGGAGAGGGACAGCCGTAAAGACTCCTCCGCGTGTGCCGGTAACAGATGGAGGGCAGGTGTCCGTGAGAGGCGGCCTTTTCTGGACACCAGCTGAATCCCGCAGCCGCCCATATGGAGCATCGCGCTTTTCCCTTGGCAGGGGAATGACAACTGCTGGAGCTCCAGATGTGAGAGATGAAGCTGGGAGGAATTGTGTGAAAACGCTCAGATTTACCAGCCATTATAGCAGCACCTTTCACCTCTCATCATGCACTGAGAAAACAGACTAATTTTGGAATAACACTCCAACTGTTCACTGACAGCACATATGGAGAAACATGAAACCAGATACTGAGGAAAAAGCCGTCAATAGCTAAAACAATACTCTCATGCATTATTTCAGCTTGTGATTAAGTTAAGCTAAATTTCTAATTGTTGTTTTGTAACGTAATAgactaaaattacaataaaactgaaacagaaaataattataaacattaagaaaaacgtttaaaatgaaatgaaaactgaaattaaaGAAAACTAAAAGTGAATACACAGATAGGATATGACAAATAATTAGCTAGCAAGTCATAGCAGTACAGTATTGGAtgtacaaaaagaaacaaaaactgaaaaaataaaataacttaaaacaaaaaacaatcacgatcatcttaatttaaataaaaaaatacattcataaaaataaaaaagtaaagcgTTGCTTAGATCGGAGGAAAAAGGACAAATGGATATattgtttacattatatttacaaattttatacATAAAAAGCATACCCtctctttaataaaaaattaacattaaataaataaatgtgatttctaataataataataatcacacaacaataataatgatataatgattattatgattgaatatatttcagatttgcaaaagtgtagatagcaccctctagtggattagacatctgaaacgtgcaacaaaatgtaccctaagtaacgtatttcagattcgccaAAATATAGTCAGCGCCTCaagtggatttgacatctgaaacatgcaacaaaacttGGCCTAAGTTGCATGTttaagatttgcaaaaatgtaaacagcgccctttAGTGGATTTGACATATTAAACGTACAAAAAATGCACCCTACATAACATAATTCAGACTTGCAAcgatgtagacagcgccctctagtggatttgacatctaaAACCTACAACATAccataagtaacgtatttcaaattcgcaaaaatgtagacagtgccctctggtggaggTGGCATCGGAATCGTACAACAAAACATGCCCTAAGTATCTCATTTCAGATtcgtaaaaatgtagacagtgccctctagtggatttgacatctgaaacatgcaacaaaacaccataagtaatgtatttcgaattcgcaaaaatgtagacagcgctctCTTGTGGAGGTGGCTTCGGAAACATACAAGTTTCGTtttttcagattcgcaaaaatgtagacagcgccatctagtggatttgacTTCAAAACGTGCAGCAAAACTTACCCtgagtaaaatatttcagattcgcaaaaatgtagacagtgccctctagtagatttgatgtctgaaacatgcaacaaagcgTACCCTAAGTAGCGTATTTTAAATTCCCAAAAATGTAGACATTGCCATCGAGTGGATTTGACAtctaaaatgtgcaacaaaacataccctaagtaacgtatttcagatttgcaaggatgtagacagcgccctctagagaATCttacaagaataaaaataaaccttgatttaaatatttgttttaaatatatttttatataaaacaaaaagggGAAAAGGACATAttaat
>TCONS_00030139
GCCTTTTCTGGACACCAGCTGAATCCCGCAGCCGCCCATATGGAGCATCGCGCTTTTCCCTTGGGGAATGACAACTGCTGGAGCTCCAGATGTGAGAGATGAAGCTGGGAGGAATTGTGTGAAAACGCTCAGATTTACCAGCCATTATAGCAGCACCTTTCACCTCTCATCATGCACTGAGAAAACAGACTAATTTTGGAATAACACTCCAACTGTTCACTGACAGCACATATGGAGAAACATGAAACCAGATACTGAGGAAAAAGCCGTCAATAGCTAAAACAATACTCTCATGCATTATTTCAGCTTGTGATTAAGTTAAGCTAAATTTCTAATTGTTGTTTTGTAACGTAATAgactaaaattacaataaaactgaaacagaaaataattataaacattaagaaaaacgtttaaaatgaaatgaaaactgaaattaaaGAAAACTAAAAGTGAATACACAGATAGGATATGACAAATAATTAGCTAGCAAGTCATAGCAGTACAGTATTGGAtgtacaaaaagaaacaaaaactgaaaaaataaaataacttaaaacaaaa
>TCONS_00030140
aaaaaagtttcaaaatgCCCAAAGAGGTCATTGTAGGTTACAATAACAGTGGAAAATCACCGCAAAAATACATTCTCTGTgattattattacagtattttaatgATGTGCTGAGTGAACTCTTGTCAGATTACCTTCTATTGGCCCCGCCTCCTTCCCTACGGGCCTATCAGAACCAATCTTTACTTGATTGACAGGTATGAGTGGTTTATGTGGCTCTGTGATGGTACTCAGCGGGAAACGCTCTGGTGACTTATTATCCGTCTCATCCCTCCAACAAACTTTCGCCTTTCCCGGATACACCCCTTCAGGCCTACAACCCGCAGCTTTGCCCTCATGAGCGCTTTTAATTTTCTGCCGCTGAGCCTCTCTGACCTCCAGGGGGAGCTCTAGTGGAGCGAGTTTCACAGGGCGCCGCGGAGGCAGGTTTTCagcctctttttctctctctggaGCTCGACTAATGTTATTACCCTGTTCCTGAAtagaggaggatgaggaggaaaAAGAAGAGGAGGACGAAGAGGAGAGGGACAGCCGTAAAGACTCCTCCGCGTGTGCCGGTAACAGATGGAGGGCAGGTGTCCGTGAGAGGCGGCCTTTTCTGGACACCAGCTGAATCCCGCAGCCGCCCATATGGAGCATCGCGCTTTTCCCTTGGCAGGTCAAACTCTCCTGCATctgtaacacacacAACGGTCGCCATATTTTCATGTGCGTGTTTTTGTCGAATCATCAgtcggtgtgtgtttgttttttcc

Function

GO:

id name namespace
GO:0002687 positive regulation of leukocyte migration biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029750 False 2263 lncRNA 0.38 2 4538801 4560700
TCONS_00030139 False 564 lncRNA 0.35 2 4539995 4560199
TCONS_00030140 True 760 lncRNA 0.49 2 4556771 4560795

Neighbor

gene id symbol gene type direction distance location
XLOC_014476 CT583670.1 coding downstream 57504 4481183 ~ 4481297 (-)
XLOC_014475 NA coding downstream 88895 4446753 ~ 4449906 (-)
XLOC_014474 CU570886.1 coding downstream 334442 4204245 ~ 4204359 (-)
XLOC_014473 rragcb coding downstream 401714 4126905 ~ 4137087 (-)
XLOC_014472 fhl3b coding downstream 420426 4089494 ~ 4118375 (-)
XLOC_014478 NA coding upstream 117447 4678242 ~ 4686631 (-)
XLOC_014479 NA coding upstream 128534 4689329 ~ 4705772 (-)
XLOC_014480 st3gal1 coding upstream 212915 4773710 ~ 4793333 (-)
XLOC_014481 fbxl20 coding upstream 267456 4828251 ~ 4851411 (-)
XLOC_014482 chd4a coding upstream 440090 5000885 ~ 5058908 (-)
XLOC_014711 CR382300.3 misc upstream 15167895 19728690 ~ 19728755 (-)
XLOC_014459 CT030005.2 non-coding downstream 777398 3760178 ~ 3761403 (-)
XLOC_014455 NA non-coding downstream 823888 3602024 ~ 3714913 (-)
XLOC_014483 NA non-coding upstream 521329 5082124 ~ 5093823 (-)
XLOC_014495 BX323079.2 non-coding upstream 855004 5415799 ~ 5415915 (-)
XLOC_014496 NA non-coding upstream 1034281 5595076 ~ 5601213 (-)

Expression


Co-expression Network