XLOC_014480 (st3gal1)


Basic Information

Item Value
gene id XLOC_014480
gene name st3gal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 4773710 ~ 4793333 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028660
ATGTTTCCCTTCAGTAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGGTCTGTGCGCCTGTAATAAATGTGTGATGGATCTGAACGACGAAGACTGGTTCTTCATTCGCTTTAACCCTACAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATAGACAGCCACGATTTTGTCATAAGGATAAATAAAGGCCCAACTAAAGGCTATGAGACGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGCGCTATGGATTTGGACAACTCCACTCATCTGGTGCTTCTGCCCTTTAAGGTCAAAGACATGCAGTGGCTCATCAGTGTTTTCACTACAAAACACATCACAAGCACTTATTTAAAAGTGAGACCTACCATAAACGCTGATCGAGAGAAGGTGATGATCATCCATCCTGCCTTTATAAAATACGTCTATGAGAGCTGGCTGCGGAAACACGGCAGTTACCCATCAACCGGATTCATTACGCTGATATTTGCCCTGCATATCTGCGATCAGGTCAGTGTTTTCGGGTTTGGCGCTAAGCTTGACGGGAACTGGCATCATTATTTTGACGAAAGCTTAGCTCACTTTAACAGAGGCCGACATGGGGGAGATTATGAAAACAGAACCATACACAAGCTTTTGCTGATGAACAAGATTGCCTTGCATAAAGGGCTGTAA
>TCONS_00028661
GATCAGTTCTCCAGCCACGCAAATGCTCAAACTGATCCAGAATCAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGGTCTGTGCGCCTGTAATAAATGTGTGATGGATCTGAACGACGAAGACTGGTTCTTCATTCGCTTTAACCCTACAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATAGACAGCCACGATTTTGTCATAAGGATAAATAAAGGCCCAACTAAAGGCTATGAGACGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGCGCTATGGATTTGGACAACTCCACTCATCTGGTGCTTCTGCCCTTTAAGGTCAAAGACATGCAGTGGCTCATCAGTGTTTTCACTACAAAACACATCACAAGCACTTATTTAAAAGTGAGACCTACCATAAACGCTGATCGAGAGAAGGTGATGATCATCCATCCTGCCTTTATAAAATACGTCTATGAGAGCTGGCTGCGGAAACACGGCAGTTACCCATCAACCGGATTCATTACGCTGATATTTGCCCTGCATATCTGCGATCAG
>TCONS_00028662
AACTTACAAAGCACAGCTGCGACAGCTATCTTGATCAGTTCTCCAGCCACGCAAATGCTCAAACTGATCCAGAATCAGGTTTACTGTCACCGTTCCAGATTCTGTTTAGAAGCTGCGGGAACCAAAATTCTGAACAGATCGttgtaAATATGTTTCCCTTCAGTAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGGTCTGTGCGCCTGTAATAAATGTGTGATGGATCTGAACGACGAAGACTGGTTCTTCATTCGCTTTAACCCTACAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATAGACAGCCACGATTTTGTCATAAGGATAAATAAAGGCCCAACTAAAGGCTATGAGACGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGCGCTATGGATTTGGACAACTCCACTCATCTGGTGCTTCTGCCCTTTAAGGTCAAAGACATGCAGTGGCTCATCAGTGTTTTCACTACAAAACACATCACAAGCACTTATTTAAAAGTGAGACCTACCATAAACGCTGATCGAGAGAAGGTGATGATCATCCATCCTGCCTTTATAAAATACGTCTATGAGAGCTGGCTGCGGAAACACGGCAGTTACCCATCAACCGGATTCATTACGCTGATATTTGCCCTGCATATCTGCGATCAG
>TCONS_00028663
ATCCAGAATCAGGTTTACTGTCACCGTTCCAGATTCTGTTTAGAAGCTGCGGGAACCAAAATTCTGAACAGATCGttgtaAATATGTTTCCCTTCAGTAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATAGACAGCCACGATTTTGTCATAAGGATAAATAAAGGCCCAACTAAAGGCTATGAGACGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGCGCTATGGATTTGGACAACTCCACTCATCTGGTGCTTCTGCCCTTTAAGGTCAAAGACATGCAGTGGCTCATCAGTGTTTTCACTACAAAACACATCACAAGCACTTATTTAAAAGTGAGACCTACCATAAACGCTGATCGAGAGAAG
>TCONS_00028664
TGAAAACTTACAAAGCACAGCTGCGACAGCTATCTTGATCAGTTCTCCAGCCACGCAAATGCTCAAACTGATCCAGAATCAGGTTTACTGTCACCGTTCCAGATTCTGTTTAGAAGCTGCGGGAACCAAAATTCTGAACAGATCGttgtaAATATGTTTCCCTTCAGTAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGGTCTGTGCGCCTGTAATAAATGTGTGATGGATCTGAACGACGAAGACTGGTTCTTCATTCGCTTTAACCCTACAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATAGACAGCCACGATTTTGTCATAAGGCCCAACTAAAGGCTATGAGACGGATGTGGGGTCTAAGACCACTCACCGGATCATGTATCCCGAGAGCGCTATGGATTTGGACAACTCCACTCATCTGGTGCTTCTGCCCTTTAAGGTCAAAGACATGCAGTGGCTCATCAGTGTTTTCACTACAAAACACATCACA
>TCONS_00028665
TCAGTTCTCCAGCCACGCAAATGCTCAAACTGATCCAGAATCAGGTTTACTGTCACCGTTCCAGATTCTGTTTAGAAGCTGCGGGAACCAAAATTCTGAACAGATCGTAGATTTCCATACGTGACGGCTCTCTTCTCTTGTGGCATCTTCTTGCTGTTTATCTTCCTTCAAAACACGGTGATTTACAACTCCCTTCAAACGGTTTACTCCACCGGAGGTCTGTGCGCCTGTAATAAATGTGTGATGGATCTGAACGACGAAGACTGGTTCTTCATTCGCTTTAACCCTACAGTTCCAACTCTGCTGAACAGGAGAAACAGCGCAATGCGGTCGGACGTCTTCGAGTGGTGGCAGGGTCTGCAATCTGATTCACAAAAGGCTAATTTCTCAGATGTGGTGGACATATTGTTTTCTCTGTTCCCCGATGAAGAACACTATGTAGTCACTGATCCAAATCGATGCAGGATCTGCGCTGTGGTGGGAAACTCTGGGAACATCTTGGGATCCCATTATGGTCAACTAATA

Function

symbol description
st3gal1 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060321-1 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region. Orthologous to human ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000079654

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028660 False 966 mRNA 0.46 6 4773710 4785734
TCONS_00028661 False 830 mRNA 0.46 6 4775092 4793297
TCONS_00028662 False 950 mRNA 0.45 7 4775092 4793329
TCONS_00028663 False 689 mRNA 0.45 7 4775326 4793263
TCONS_00028664 False 775 processed_transcript 0.46 5 4780991 4793333
TCONS_00028665 True 525 mRNA 0.46 4 4781268 4793295

Neighbor

gene id symbol gene type direction distance location
XLOC_014479 NA coding downstream 67938 4689329 ~ 4705772 (-)
XLOC_014478 NA coding downstream 87079 4678242 ~ 4686631 (-)
XLOC_014477 NA coding downstream 212915 4538801 ~ 4560795 (-)
XLOC_014476 CT583670.1 coding downstream 292413 4481183 ~ 4481297 (-)
XLOC_014475 NA coding downstream 323804 4446753 ~ 4449906 (-)
XLOC_014481 fbxl20 coding upstream 34918 4828251 ~ 4851411 (-)
XLOC_014482 chd4a coding upstream 207552 5000885 ~ 5058908 (-)
XLOC_014483 NA coding upstream 288791 5082124 ~ 5093823 (-)
XLOC_014484 tpi1a coding upstream 300885 5094218 ~ 5103313 (-)
XLOC_014485 gnb3b coding upstream 312893 5106226 ~ 5135345 (-)
XLOC_014711 CR382300.3 misc upstream 14935357 19728690 ~ 19728755 (-)
XLOC_014495 BX323079.2 non-coding upstream 622466 5415799 ~ 5415915 (-)
XLOC_014496 NA non-coding upstream 801743 5595076 ~ 5601213 (-)
XLOC_014499 CU207217.1 non-coding upstream 916514 5709847 ~ 5712019 (-)
XLOC_014501 CU207217.2 non-coding upstream 980588 5773921 ~ 5774035 (-)

Expression


Co-expression Network