XLOC_014484 (tpi1a)


Basic Information

Item Value
gene id XLOC_014484
gene name tpi1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5094218 ~ 5103313 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028672
AGCCTTCCAATGTCAAATGGCCGCCTCCTGAATATTCAAGATAAAGCCTACTCCGTAGTAGGATTTGTTAAGTCTCCTCACGGTCACGGGAGTGATATTATCGCATTCAGTAGTGTGTTTGGTCCGTTTGGTTTGTCCTGCAAAAATGTCCTCAAGGAAATTCTTCGTCGGAGGAAACTGGAAAATGAACGGCGATAAAGAGTCTCTGGGCGAGCTCATAATGACCTTGAACACGGCCAGTCTCAACGATGAAACAGATGTAGTTTGTGGAGCACCGTCCATCTATCTGGATTACGCCAGGTCTAAACTGGACCAGAGGATTGGTGTGGCTGCTCAAAACTGCTATAAGGTGCCCAAAGGAGCCTTCACCGGGGAGATCAGCCCAGCGATGATTAAAGACTGCGGCATCGACTGGGTGATTTTGGGCCATTCTGAGAGGCGTCATGTTTTTGGGGAGAGCGATGAGCTGATTGGTCAGAAGGTGGCCCATTGCCTGGAGAGCGATTTGGGCGTGATCGCCTGCATTGGGGAGAAACTGGAGGAGAGAGAGGCTGGAACCACCGAGGACGTGGTGTTTGAGCAGACCAAAGTCATCGCAGACAATGTGAAGGACTGGACTCGTGTGGTCTTGGCGTATGAACCAGTATGGGCTATTGGCACTGGCAAAACTGCCTCTCCTGAACAGGCGCAGGAGGTGCACGAGAAGCTGAGAGGATGGCTGAGAGCGAACGTGTCGGATGCAGTTGCTGACTCTGTGCGCATCATCTACGGAGGCTCTGTTACTGGGGGAAACTGCAAAGAGCTGGCGGCCCAGGCTGACGTTGATGGCTTCCTGGTTGGAGGGGCTTCCCTTAAACCAGAGTTTGTCGACATCATCAATGCCCGCTCGTAGAGATGCTCAACCAGACGCTCTGAAACCACTGCACTGCCCAACCAGTATAAACCAGCTTCATGTTGTCATTCCAGCAGGTCTGAATGTTTGTTTGTGCTCTTGTTACTGTTTGCTTGTTAAATGCTCAAGCTGGATTATCGGACTGGAAAATTAACTCCCTACTTCGAATGTGTTACAAGAGAGCTTGGGCATGCTTGTTATTTCCTCGCTGCTGCACCGCTGTGTGGGGTCTATGCACTTACAGAGCACACTTACTTGAAATCTAACACGCTTTACACTGATTACCTTACAAAGTGAACGCTTAACTGAATTTGTAGTGACTTTCAAAAAGCACTTTATCCTCTGTAGAGATGACTACCTCAGTAGATGATTAAAAACCTCTTTGTCCTGTCATG
>TCONS_00028673
GGAAACTGGAAAATGAACGGCGATAAAGAGTCTCTGGGCGAGCTCATAATGACCTTGAACACGGCCAGTCTCAACGATGAAACAGATGTAGTTTGTGGAGCACCGTCCATCTATCTGGATTACGCCAGGTCTAAACTGGACCAGAGGATTGGTGTGGCTGCTCAAAACTGCTATAAGGTGCCCAAAGGAGCCTTCACCGGGGAGATCAGCCCAGCGATGATTAAAGACTGCGGCATCGACTGGGTGATTTTGGGCCATTCTGAGAGGCGTCATGTTTTTGGGGAGAGCGATGAGCTGATTGGTCAGAAGGTGGCCCATTGCCTGGAGAGCGATTTGGGCGTGATCGCCTGCATTGGGGAGAAACTGGAGGAGAGAGAGGCTGGAACCACCGAGGACGTGGTGTTTGAGCAGACCAAAGTCATCGCAGGCGCAGGAGGTGCACGAGAAGCTGAGAGGATGGCTGAGAGCGAACGTGTCGGATGCAGTTGCTGACTCTGTGCGCATCATCTACGGAGGCTCTGTTACTGGGGGAAACTGCAAAGAGCTGGCGGCCCAGGCTGACGTTGATGGCTTCCTGGTTGGAGGGGCTTCCCTTAAACCAGAGTTTGTCGACATCATCAATGCCCGCTCGTAGAGATGCTCAACCAGACGCTCTGAAACCACTGCACTGCCCAACCAGTATAAACCAGCTTCATGTTGTCATTCCAGCAGGTCTGAATGTTTGTTTGTGCTCTTGTTACTGTTTGCTTGTTAAATGCTCAAGCTGGATTATCGGACTGGAAAATTAACTCCCTACTTCGAATGTGTTACAAGAGAGCTTGGGCATGCTTGTTATTTCCTCGCTGCTGCACCGCTGTGTGGGGTCTATGCACTTACAGAGCACACTTACTTGAAATCTAACACGCTTTACACTGATTACCTTACAAAGTGAACGCTTAACTGAATTTGT

Function

symbol description
tpi1a Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).

GO:

id name namespace
GO:0019242 methylglyoxal biosynthetic process biological_process
GO:0006094 gluconeogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0019563 glycerol catabolic process biological_process
GO:0046166 glyceraldehyde-3-phosphate biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004807 triose-phosphate isomerase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0008929 methylglyoxal synthase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020416-3 Predicted to enable methylglyoxal synthase activity; protein homodimerization activity; and triose-phosphate isomerase activity. Predicted to be involved in several processes, including gluconeogenesis; glyceraldehyde-3-phosphate biosynthetic process; and methylglyoxal biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in liver. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and triosephosphate isomerase deficiency. Orthologous to human TPI1 (triosephosphate isomerase 1).

Ensembl:

ensembl_id ENSDARG00000025012

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028672 False 1287 mRNA 0.49 7 5094218 5103313
TCONS_00028673 True 949 mRNA 0.51 6 5094298 5103141

Neighbor

gene id symbol gene type direction distance location
XLOC_014483 NA coding downstream 395 5082124 ~ 5093823 (-)
XLOC_014482 chd4a coding downstream 35310 5000885 ~ 5058908 (-)
XLOC_014481 fbxl20 coding downstream 242807 4828251 ~ 4851411 (-)
XLOC_014480 st3gal1 coding downstream 300885 4773710 ~ 4793333 (-)
XLOC_014479 NA coding downstream 388446 4689329 ~ 4705772 (-)
XLOC_014485 gnb3b coding upstream 2913 5106226 ~ 5135345 (-)
XLOC_014486 stx1b coding upstream 54993 5158306 ~ 5254699 (-)
XLOC_014487 prf1.3 coding upstream 156190 5259503 ~ 5265155 (-)
XLOC_014488 krt1-19d coding upstream 221340 5324653 ~ 5332784 (-)
XLOC_014489 krtt1c19e coding upstream 236051 5339364 ~ 5345932 (-)
XLOC_014711 CR382300.3 misc upstream 14625377 19728690 ~ 19728755 (-)
XLOC_014478 NA non-coding downstream 407587 4678242 ~ 4686631 (-)
XLOC_014477 NA non-coding downstream 533423 4538801 ~ 4560795 (-)
XLOC_014476 CT583670.1 non-coding downstream 612921 4481183 ~ 4481297 (-)
XLOC_014495 BX323079.2 non-coding upstream 312486 5415799 ~ 5415915 (-)
XLOC_014496 NA non-coding upstream 491763 5595076 ~ 5601213 (-)
XLOC_014499 CU207217.1 non-coding upstream 606534 5709847 ~ 5712019 (-)
XLOC_014501 CU207217.2 non-coding upstream 670608 5773921 ~ 5774035 (-)
XLOC_014503 LO018585.1 non-coding upstream 739778 5843091 ~ 5843205 (-)

Expression


Co-expression Network