XLOC_014486 (stx1b)


Basic Information

Item Value
gene id XLOC_014486
gene name stx1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5158306 ~ 5254699 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028679
ctctcttttttttttgcagcatcaGTACCGCGTTCGGAATCGCATTCGTGTGCTGGAGTCAGAGCGCGCTGCGGGGCATCACTGCACCGCCACGGAGGACACACCACCACCATCACACAACCAGGAACAGGGAAAAGGGGGAAAAGGCGTGAAATAGCGCAGAGAGGAGACAGAAGAAACAGGGCGgccttttttttccccccaaatcaCCTGCTACATCTGTGGGAAATTAAAACAGGAGCCAGACATTTGCCAAGCATAAAAACACGAACGCAGCGGACATCTCAAGAGATATTTTTGGCCAGCACGGCGGGGAAAAATGAAGGATCGCACGCAGGAACTACGAAGTGCTAAGGACAGTGACGATGACGAGGAAGTCGTTCATGTCGACCGAGACCACTTTATGGATGAATTTTTCGAAcagGTGGAGGAGATCCGCGGCTGTATTGAAAAGCTGTCAGAGGATGTGGAACAGGTGAAGAAGCAGCACAGTGCCATCCTAGCAGCACCAAACCCTGATGAAAAGACTAAGCAGGAGTTGGAGGACCTCACAGCTGACATTAAGAAGACAGCCAATAAAGTGCGCTCTAAATTAAAAGCTATCGAACAAAGTATCGAGCAAGAGGAAGGGTTGAACAGATCATCTGCAGATTTGCGGATCCGCAAGACACAGCATTCCACGCTGTCACGCAAGTTTGTGGAGGTGATGACAGAGTACAACACCACGCAGTCCAAATACAGGGACCGCTGCAAGGACCGTATTCAGAGACAACTGGAAATTACTGGCAGAACAACTACCAATGAGGAGCTGGAAGACATGTTGGAGAGTGGGAAGCTTGCAATCTTCACTGATGATATCAAAATGGACTCCCAGATGACCAAGCAGGCACTAAATGAGATTGAGACCCGACACACTGAGATCATTAAGTTGGAGAACAGCATCCGTGAGCTGCACGATATGTTTGTGGACATGGCCATGCTGGTGGAGAGTCAGGGAGAGATGATTGACAGAATTGAGTATAACGTGGAACACTCTGTGGACTATGTAGAGAGAGCGGTTTCTGACACCAAGAAGGCTGTCAAATACCAGAGTCAGGCACGCAAGAAGAAGATCATGATCATCATCTGCTGTGTAATTTTGGGAGTGGTTTTGGCGTCCAGTATCGGAGGAACCCTGGGCTTCTAAACGACATGAAGAGAGTCAAACACTTGGAAAGCTGAGTGTTTTATCCACTTAAACACGAGATAAGGAAACTGTCATAAAAACGGGGGTTGGGTAGGGTTAAAAATTCAAAAATCAACCAatcgagaaaataaataaatcaataaataaaggaGATGTTACGTACTAgatgatttaaatatatatatatatacaaaaagtgggttcaaataaacataatatttacaAACTGTACATGTAAATGTATTGAACATACAAGCGGCACATGGGTTACTACTACCTGTAAAGGAATAAAaatcaattttgtttttatttattttctttttcttttagcgTTGCTTTCGTTTTTGGGGGGGCCTCCAGGACAGTGCCAGCAACTGCTAAATTGTTTTTACGTTTCGGCAGAACATGGTGTTTGGCAAACCATACTAGCATTATGAATACTAACCAACTGACTGCATAGATGTTTTAGATACTAGTGCTAGTCCGATTTCAATGGCCTAAAGTTCCGAGTGGTTGCTTGCATTCAGACGAAAACCTCTCATTATTGCATTATTAGCTCATTGCCGATGGAGTGCTGTAGTTTAAAAGCACCGTCAACCTCATAGCCGAATTTCTGTCGTAGTAGTTTTACTGTGGGCAAACGTAAACgacgaagaagaaaaaaagaagcacacaTCATTGCGAATTCTGAGAGGACATGTTTCGGCAAGTTTGTACTTGACAGTGATTTTCTTTTGATGTACTGTAGAAAGGAACGAACATTTCATTTCAACACGTTTAGAAAGCTACGCTGGGATCGATAGAGTGGCATTGCGCAAACTGTTGAACTATGCAGTTTTGATAGTGATTCGCCCCTGCTTTTTGAATTTATTTACGGAAATCTAGGGATTGATCAAGAGACAAATTGTATTTGTCTATGGCGAAGATTTCACGGGAACATTTTGATCAATACTTGAAGCAACGCCTAgcctaaatattatttttattggaaGGTGGTTAGGTCTGCTGAAAGGAGTTTCcttgttctgttttttttcatttagttttgcgctttttgtttatttgccttgttttatattttaactatTAAACATGAACAGCTTGAACAGGGCCGTTTTGGTTTCGAAGGATTGATCTGCGAGTTTGCGTGACGTTTTTCACCTTGGTGCTAGTTAACGTAGAGAGACCAATAAAAGGAAATACTGGAACGTGAGAAACACTAAGACCCTTATTGTTAGATTATACATATCTGAAACGGTAGTGGTCAACGCAGATGTTGACTAAACATTTACTTGTAGATGCACCTCGTACGGTTGGTCAGGACACTTAATATGCAGTGAAGATTAGACGTACTTCTCTAAACACCCTGAGTGACGGCATTTTGTCAAGTTGATGCTAGCTTAAAGTAAAACGCTTCGATTTCGTCCAAAGATTgatttactttttagtttatttttggaAAAGCAAATTAAATAGTTCATTTTCTTTCGCGGATAGAAAGTGCCAGCTTGGTCAGCTTGTTTTAAATTCAAGGGCTAAAATTAAAACCAAACTTTagctctgtttattttattattttggctTTTGTTGATACAGAATCCCTCTTGGCTTGATTCCGATTCGTCACACTCTTAGAAAGACCTTACCCTCATGTTCATGACGTTACAGAACATGTACCAACTCCATAAGTGCACTCCTTTTCTCAATAAGGACTTCATTTTTCCACGGAATAGATAACAGGAGCCCCCCCTCGACTCCGTCCCGCTATACCCCTATACCTACCCAAAGCGAAGCAGTAGGGAACAGGAATGATTTTGGGGATAAATACTGTACACTTTTTACAAAGCCTGAGGCAGAGGGCCGGGACTATTTTGCTTTAATCATTCCAGTAACGTCCAGCATGTTTTCTTTGAAACTTCTGTGTATTTAGTGTCGAATCACTTACATGTATGGTAAAAATGAGGTAAATATGTATGTCGGTGTTGTTTTTAGTAGACGATATAGCTGGAAGGCCCTTATTTGTTAACGCATGCAACTTTCGCTTTGTTAGTTTGCATGGCTCTCGATCATGTGTGCACTTTACAATCAAAGAAAACGACGTCTTATGCCACCGCATCTTTTTGAGTTGTACCGTTTTCCGTTTTGTTACTACGTTGACTCGTTTGTTGGTTCATTTATGGTGACTCTTTAAGGGTTGGATGGGGGGGGAATGACTTCATTTAATAGTTCATCATGACCCTGACGATGCTGGAGTTTTACCGTGGTCCCCATGAGTGTGTTCCCTGTGGATGTGCACAGTTTGTTGTCGGGTATTTTGTTCCCAAAACACGGTCATAGTGTAAAACGATGTATATCCCCCTTCCCCCCTGCCCTCCTCACCCTCCGGAATCATTTTTGCGCATCTTGTTCATTTCGCCCTTCCCCCCGATGTTTCCCGAACTTGATTGTTGTGCTTAACTGGTGATGATACGTGAATTCTTTCGTAAGACTATTCTTTATTGTGAGTCGTGTGCTGCGAATTGTGTCGAATTGTGCAACTCAAAAGGCCATGTATGCGTGCCCTGTCCCTTCtgcattttttccttttttacgTACACGTTGCTGTATATGTGAGCATGAGcatttgtgtgtgcgcgtgtgtgtgtgtgtgtgtggttgtgagtgtgtgtgtgctcgtcTGCTGTCGGAGCCCTCGGTCGCATCCGCAACGCCAACCGGGGCTTCTCTGGTCTGCAGGTCTATGATATGCGCTCCAGTTTTGTGCCGACTTCATTCAAATGTTAAGAAAAGTAATAAGACTAAAAAGCCAAAGCATTATGCGAGTACAGAGCACAATGTTACAGTCGACTGTATTGTGTAGTCCTCCCCGGCCGTAAATCTCGTGAACTATCTTGTGTATGCATTTACTATGTTTTCATTTCCACTGCTTTCAGCGACAAGGTTCTTGAtataaaggtttatttatttatttatttatattccttCTGAACAATATGTATAATGTGTACTACACGAGCTTGTTCGTTTTAAAGCACTTTCTCCAAAAACAGCTACGTACAAAATATCCCCAACAAAtgttgtgtgtactgtatgttggTTTTCTTTCGATCTTTGTACCCTCGATGATGCTGTTTATGTTTATGGCCCTTGTTCAACTCACTTGCATTGCTTCCTCTGTGCTGGCAATACATTAGACGTAGACATTAGATCAGCTCTggttaaaagaaaatgaaacaataataataaaaagaagaaaaaaaaaacctgtatacTAACACGGGCACAGATCTGGATGAAAGTTTTCTCAgttgtcttattttattttgtcaacaCTGTTTTTGGATGTTCGTCACACAGACACTGATATGACCAGACAGCACTGGCATAACACAGCACATTGAGAAGGCATTTTGTAAATGAGTGAAAATTACAAACTACTtatatatgaagaaaaaaaaactatgtaccTTTTAGAGCTTAACTGCATAATAGTCTTTTTGGTTGGGGTTGTTGAGTGCCCCGTCACTGCAGGTGAAGAAAAAGACCCAATCCGTTTGGACACGCAACACGTTCTTCGAAGCCGTCTGCAACTGCGTAGCCTGCTTTGTAGATCCAAcctaatctcacgaggaaacatgcgtattttacgttttgtcagtttagtggctaattcgtacaaattcgagttcagttgtacgaaaacgtacaattttaaaaaggaggcgtggtacCTGactccgcccctaaacccaactttcaTTGGCAGATAATGAGATTATCcgaattacccactaaatcaaaaacgtacaaattgccatgagattatgTTGGTAGATCGCAAAGCTCGCTACGCTTTAGCTGTCTGACGAACAGCTCTCAAAGACTTTTAGGTTAACGGATACGACTTCTCGACTAATGGGCACCCAAGACCTGCGATGGTGATGTTTCTCAACAGCCCCAGCCATGATCCTCCTTAATTTCATCCCCTTTTGTGTCATTCCTTTGATGTATATTCCCATTAAAATTTATACCAGTATTCTTGTTTCAGTGTTAGATTTAGAACGAGGAAAACGGTTTGCGGAGATGGTGCTCAAACTGTGATTTCAGCAAAATGACCATCATTCGCCGAGTAATGATGTGATGAAAACACTACTCTAATTAGAACGGGAAGACGACTGGATGAGGATGACATAATTGAATTATACCATTATCAAATGTGATGAATTATATAACTACGATGATTTTAAAGAATCCCGAGAAGTTGTGTTATATTAGTAGTACTTATGAATGCTCGCGATTTTGTCAATCTGAACTGAATCTTTGTCTtgtaattattgtaaatatttcaaagagaggaaaaaaaatgacTTGCATGTCCATGTATAAAACTACTAAAATAGTTCCGGTCAAAGTTGGGAGGTTGATTGATTTTCTCGTTCTTTGCCCGCTTGTCCTAAAAGCAGCATCTTACGCTTTCAGTGATGTCAAGGGTGCTCTAGAACCAAGAAAAGTGGAACAATGCTTTTCCATCAGATTCAATATAATACGTCGTGTTACCTCAGAGAGCCATCAGCGGGTTAactctgggggaaaaaaaaagtgcttCCCTCCATGTACACCATCAATAGGTCTACAGGTCAAATGCACACTATCTGTAGCTTCCAGGCACCGCTTCTCCTGCAAAGCTCCACCTCATTGGCAATGCCAAATTTAGTACAATTAGCAGCATTTTTTGTGCATTTCGTGTTATATTCACAATCGGAAATCCTAGACTGTAGCAGGGCTGAAACAGAAAGCTCTAAGGATGAGCTCTATTTGAAGAGTGGAAGTTTCTTTCAaagtacagtaaaaaaataaataataacgcTCAACGCAAACACTCATCTGTGCAATACAAAGAAAAGGGCTTTCTCACACATGCATTTGAAAGCACTGAAGAACGCCGACTTCAATGTTATTGTGGGACTCGAGAACAGCCGCCGCTTTATGTGTCGCCACACGTCTTCTCGCCCGCTATATAAAGTGCATTCAGGGCAGAAACCGCAATGAGAAGGGCACCGAGGATGCGAAGGAAGAAATCAAATCGATTTCTGCAACTTTGACTGGAATTGCAACTTCTGTCttttattttctgtgtgtgtatgtgtgtactgtattgtaaaaaaaggaaaaagatacAAACAAACAACCTAACTGTCCCTCTCTCCCCCCACTTTCTCTCTTGTAATACTGTTTGCTGTTCTGTTTGGTTAGTGTGGCGTACCAGTATCCCTCTCCTCCCCTAAACCCTTTGCTATCTTCCTCCCTTCTctcacaatctctctctctctctctctctctctctctttctctctccctcttttcTCCATGGATCTTTAAGATGAGAACTCTATGCAGATGCTGTCTTTTATAAGTGTGTCAAAATTTTAAGttgaaatgaaaaatgaaaaaagaaaaaccccAACAAACAGATATTATGaactgaaacaaaaaataaagaaaaacgaTTGTCCAGTGTACAACGGCTGTAGTTGTCTTCCCTACTTTTACTCCTTTCACCAAGCAAATGCACTGAGCTAGTTTTCACACCGCATTGCCCGGTGCAGCGTCATCATGGATTTAGATGTTACTG
>TCONS_00028680
ttgtcacAGGCTAAGGACAGTGACGATGACGAGGAAGTCGTTCATGTCGACCGAGACCACTTTATGGATGAATTTTTCGAAcagGTGGAGGAGATCCGCGGCTGTATTGAAAAGCTGTCAGAGGATGTGGAACAGGTGAAGAAGCAGCACAGTGCCATCCTAGCAGCACCAAACCCTGATGAAAAGACTAAGCAGGAGTTGGAGGACCTCACAGCTGACATTAAGAAGACAGCCAATAAAGTGCGCTCTAAATTAAAAGCTATCGAACAAAGTATCGAGCAAGAGGAAGGGTTGAACAGATCATCTGCAGATTTGCGGATCCGCAAGACACAGCATTCCACGCTGTCACGCAAGTTTGTGGAGGTGATGACAGAGTACAACACCACGCAGTCCAAATACAGGGACCGCTGCAAGGACCGTATTCAGAGACAACTGGAAATTACTGGCAGAACAACTACCAATGAGGAGCTGGAAGACATGTTGGAGAGTGGGAAGCTTGCAATCTTCACTGATGATATCAAAATGGACTCCCAGATGACCAAGCAGGCACTAAATGAGATTGAGACCCGACACACTGAGATCATTAAGTTGGAGAACAGCATCCGTGAGCTGCACGATATGTTTGTGGACATGGCCATGCTGGTGGAGAGTCAGGGAGAGATGATTGACAGAATTGAGTATAACGTGGAACACTCTGTGGACTATGTAGAGAGAGCGGTTTCTGACACCAAGAAGGCTGTCAAATACCAGAGTCAGGCACGCAAGAAGAAGATCATGATCATCATCTGCTGTGTAATTTTGGGAGTGGTTTTGGCGTCCAGTATCGGAGGAACCCTGGGCTTCTAA

Function

symbol description
stx1b Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in regulation of synaptic activity. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Is expressed in nervous system and trigeminal placode. Used to study epilepsy. Human ortholog(s) of this gene implicated in generalized epilepsy with febrile seizures plus 9. Orthologous to human STX1B (syntaxin 1B).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0098967 exocytic insertion of neurotransmitter receptor to postsynaptic membrane biological_process
GO:0060025 regulation of synaptic activity biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0048787 presynaptic active zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000330-4 Predicted to enable SNAP receptor activity and SNARE binding activity. Involved in regulation of synaptic activity. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Is expressed in nervous system and trigeminal placode. Used to study epilepsy. Human ortholog(s) of this gene implicated in generalized epilepsy with febrile seizures plus 9. Orthologous to human STX1B (syntaxin 1B).

Ensembl:

ensembl_id ENSDARG00000000503

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028679 False 6818 mRNA 0.41 10 5158306 5254699
TCONS_00028680 True 846 mRNA 0.48 9 5163938 5207361

Neighbor

gene id symbol gene type direction distance location
XLOC_014485 gnb3b coding downstream 22961 5106226 ~ 5135345 (-)
XLOC_014484 tpi1a coding downstream 54993 5094218 ~ 5103313 (-)
XLOC_014483 NA coding downstream 64483 5082124 ~ 5093823 (-)
XLOC_014482 chd4a coding downstream 99398 5000885 ~ 5058908 (-)
XLOC_014481 fbxl20 coding downstream 306895 4828251 ~ 4851411 (-)
XLOC_014487 prf1.3 coding upstream 4804 5259503 ~ 5265155 (-)
XLOC_014488 krt1-19d coding upstream 69954 5324653 ~ 5332784 (-)
XLOC_014489 krtt1c19e coding upstream 84665 5339364 ~ 5345932 (-)
XLOC_014490 krt92 coding upstream 94957 5349656 ~ 5352199 (-)
XLOC_014491 cyt1l coding upstream 101722 5356421 ~ 5358455 (-)
XLOC_014711 CR382300.3 misc upstream 14473991 19728690 ~ 19728755 (-)
XLOC_014479 NA non-coding downstream 452534 4689329 ~ 4705772 (-)
XLOC_014478 NA non-coding downstream 471675 4678242 ~ 4686631 (-)
XLOC_014477 NA non-coding downstream 597511 4538801 ~ 4560795 (-)
XLOC_014476 CT583670.1 non-coding downstream 677009 4481183 ~ 4481297 (-)
XLOC_014495 BX323079.2 non-coding upstream 161100 5415799 ~ 5415915 (-)
XLOC_014496 NA non-coding upstream 340377 5595076 ~ 5601213 (-)
XLOC_014499 CU207217.1 non-coding upstream 455148 5709847 ~ 5712019 (-)
XLOC_014501 CU207217.2 non-coding upstream 519222 5773921 ~ 5774035 (-)
XLOC_014503 LO018585.1 non-coding upstream 588392 5843091 ~ 5843205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005416 LOC108240947,LOC106533470 coding CM030142.1 CM030142.1 1342760 ~ 1359523 (+)