XLOC_014488 (krt1-19d)


Basic Information

Item Value
gene id XLOC_014488
gene name krt1-19d
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5324653 ~ 5332784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028683
ACAGCATCACCTCCATCAGCATGGCCTCCAGCTACTCCACCCGAAGCTACATGTCCTCCGGCAGCTCCATCCGCATGtcgagcagcagcagcagcagtcagcgggtcagcAGCATGCGGGCCGGCAGTGTTTATGGCGGTGCTGGAGGATCAGACGTCCGCATCTCCAGAGCCACTCATTCTGCTGGAGGCTTCAGCATGTCTGGATCTGCAGACAACAGCAGCATCATCGGCAATGAGAAGATCACCATGCAGAGCCTCAATGACCGTCTGGCCACTTACCTGGCTAAGGTGCGCGCACTAGAGAAGGCCAATGCAGAGCTGGAGCTGAAGATCCGTCAGTTTCTAGATGGCAAAGCCTCCCCGAAGACTCGCGACTATAGCGCGTACTATGTCACCATTGAGGATCTGCAGACCAAGATCATGGCAGCCATTCATCTGAAGGGTGGACTCCATCTCAGCATCGACAACACCAGTCTGGCcatgaatgattttaaaacaaaATTTGAAATGGAGCACGTCATGCGTCAGTCTGTGGAAGCGGACATTGTGGGCCTGAAGAGGGTGCTGGATGAGCTCAACATGTCCAGAAAGGACATCACCATGCAGATTGAAGGCCTGAAGGAGGAGCTGGTGTTCTTGAAGAAGAACCATGAGGAGGATCTCTTGGCTGCGCGCGCACAAATGAGCGGACAGGTCCACGTCGAAGTAGACGCCGCTCCACACCAAGATCTCACAAAAATCCTGGCAGAAATCCGTGAACATTACGAAGCAGTCACAGCGAAGAACCAAAGAGAACTGGAGCAGTGGTTCAAGACAAAGTCAGAGTCTCTGAAACAAGAAGTCGTCACCAGCACCACAGACCTGAAAACATCTCGCTCTGAAATCAACGCGGTCAAATCCAGACTGCAGGCGTTGGAAATCGAACTCCAGTCCCTCCTAGCCTTGAAAGCATCGTTGGAGACCACGCTGTCCGACACGAAGAATCGATACTCGATGAAGCTCTCTGGCTACCAGCATCAGGTCACTGTCCTGGAGGAGCAGATAGTGCAGCTCCGAGCTGATCTGGAGCGCCAACGTCATGATTATCAGATGCTTCTGGACATCAAGGCCAGACTGGAGATGGAGATCGCAGAGTACAGGAGACTGCTGGATGGAGAAGCCACTGTCAAAACAACCTCCAGTTCCACCTCGAGAACAAAAGTCATCACAGTCGTGGAAGAGGTTGTAGATGGAAAAGTGGTTTCCACCTCCAGCTCTTCAACCATGTCTGACAGTCGCAGATTGATCTGATATAATAATGCCTGTTTGTATTTGCAGTATATGCACAGAACTGGAAAccaaataaaacagcatttacagTGTATTCTAA

Function

symbol description
krt1-19d Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in epidermis. Human ortholog(s) of this gene implicated in several diseases, including corneal dystrophy (multiple); ectodermal dysplasia (multiple); epidermolysis bullosa simplex (multiple); focal nonepidermolytic palmoplantar keratoderma 1; and hereditary mucosal leukokeratosis. Orthologous to several human genes including KRT12 (keratin 12); KRT13 (keratin 13); and KRT14 (keratin 14).

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060316-1 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament. Is expressed in epidermis. Human ortholog(s) of this gene implicated in several diseases, including corneal dystrophy (multiple); ectodermal dysplasia (multiple); epidermolysis bullosa simplex (multiple); focal nonepidermolytic palmoplantar keratoderma 1; and hereditary mucosal leukokeratosis. Orthologous to several human genes including KRT12 (keratin 12); KRT13 (keratin 13); and KRT14 (keratin 14).

Ensembl:

ensembl_id ENSDARG00000023082

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028683 True 1371 mRNA 0.51 8 5324653 5332784

Neighbor

gene id symbol gene type direction distance location
XLOC_014487 prf1.3 coding downstream 59498 5259503 ~ 5265155 (-)
XLOC_014486 stx1b coding downstream 69954 5158306 ~ 5254699 (-)
XLOC_014485 gnb3b coding downstream 189308 5106226 ~ 5135345 (-)
XLOC_014484 tpi1a coding downstream 221340 5094218 ~ 5103313 (-)
XLOC_014483 NA coding downstream 230830 5082124 ~ 5093823 (-)
XLOC_014489 krtt1c19e coding upstream 6580 5339364 ~ 5345932 (-)
XLOC_014490 krt92 coding upstream 16872 5349656 ~ 5352199 (-)
XLOC_014491 cyt1l coding upstream 23637 5356421 ~ 5358455 (-)
XLOC_014492 cyt1 coding upstream 29636 5362420 ~ 5364649 (-)
XLOC_014493 krt17 coding upstream 34546 5367330 ~ 5372572 (-)
XLOC_014711 CR382300.3 misc upstream 14395906 19728690 ~ 19728755 (-)
XLOC_014479 NA non-coding downstream 618881 4689329 ~ 4705772 (-)
XLOC_014478 NA non-coding downstream 638022 4678242 ~ 4686631 (-)
XLOC_014477 NA non-coding downstream 763858 4538801 ~ 4560795 (-)
XLOC_014476 CT583670.1 non-coding downstream 843356 4481183 ~ 4481297 (-)
XLOC_014495 BX323079.2 non-coding upstream 83015 5415799 ~ 5415915 (-)
XLOC_014496 NA non-coding upstream 262292 5595076 ~ 5601213 (-)
XLOC_014499 CU207217.1 non-coding upstream 377063 5709847 ~ 5712019 (-)
XLOC_014501 CU207217.2 non-coding upstream 441137 5773921 ~ 5774035 (-)
XLOC_014503 LO018585.1 non-coding upstream 510307 5843091 ~ 5843205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_04724377_04727991 KRT1-19D coding CI01000319 null 4724326 ~ 4728037 (-)