XLOC_014490 (krt92)


Basic Information

Item Value
gene id XLOC_014490
gene name krt92
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5349656 ~ 5352199 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028686
ggAAATCCATGACTTCATTCTAATGGAATAAACTTTAAGGCATTCCTTTAGAATCTCAATGAACCATTCAAATTTTAACATGCCAAACTAACCTGTCTCAGCCACACCTATAGCCTTTGGGAATTTGGCAATAGTTTCAGGGTCCACCCCCTCAGGCAATTCATCCAGTCCCTCCCTCTTTTGTCCACATAAAAAAGGGACAAGGGTCATCTTCTCCGTACTCATCCGCTCACTTCTTCTCCAGGCAGAGCAGACGACGACAGCAGGACTCCATCAAAATGATGTCTTCTTCATCCACCCGCACCTACATGTCCTCAGGAGGATCTTCCCGAGTCTCTGTCTCTGGTGGTGGAGCTGGTCGTGTCACAGGAATGCGTGCCGGTAGTGTGTATGGAGGAGCAGGAGGATCCGGGGTTCGCATCTCCAGTTCTTCTCTTTCTCGATCCTACTCTTCTGGAAGCACTGGCTATGGCGCTGGCTTCCATCTGTCTGATGCCATTGACGTGTCTGCGAATGAGAAAGCCACCATGCAAAACCTCAATGACCGTCTGGCCTCCTACCTGGAGAAGGTGCGCACCCTGGAGAGGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGACGGCTCCCTCTGCTCGGGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGTCAAGATCCAGCATGCTACTGGTTTAAACGGAGGGATCTACCTCAGCATTGACAACGCCAAGCTGGCTGCCGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATCGCTGGCTTGAGGAGGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAGAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGAACTCTTGGCAGTGCGTGCCCAGATGACCGGACAAGTCAACGTAGAGGTCGACGCAGCACCACAGGAAGACCTGACAAAGATCATGGCTGAAATCCGTGAACACTACGAATCAGTTGCTGCCAAGAACCGCAAAGATCTTGAGGCTTGGTTCCAGGCCAAGACCGAAACCCTCACCAAGGAAGTTGCTGTGAGCACAGAAACCCTTCAAATATCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTTCAGTCACAACTCAGCATGAAAGCGTCATTGGAAGGTACTCTGGCAGACACACAGGCCCGCTATGCTGCCATGCTATCTGGCTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAGCTGGTGCAGCTTCGTGGTGACCTTGAGCGTCAAAGCCAGGAATACAAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACAAGTGTCTCAAGCTCAAGCTCAAGTTCCACAACACGCAAGGTGGTAACCATTGTGGAAGAGGTGGTGGACGGCAAAGTGGTCAGCTCATCCTCCCAATCTACGAGCGAGGTTGTGTCTCAAAAGCATTAAGCAACAACAATCCACCTCAAGAGTGCTGAAAAACCAATAAAATGGTCTAACtgtgaatttacactgtttgTCCTGTTTTTTCTGTTTGGCTGAGATGACATGTTTGGAAATTTAGGCatttagattaaaaatatatacatatcctGCAATATTAGCCTTTTTCTGGTATGACAATTAGGATTAGAAAAAAAGGATAAATACTTAATTCTCTGTTCTGAAGTGGTAATATACAAAATTTTGAACATGAAACTTGATGCtttgatatattaaataacaatGTTATAAATTATTTCCATTTACAAACATGTACAActac
>TCONS_00028687
GTACTCATCCGCTCACTTCTTCTCCAGGCAGAGCAGACGACGACAGCAGGACTCCATCAAAATGATGTCTTCTTCATCCACCCGCACCTACATGTCCTCAGGAGGATCTTCCCGAGTCTCTGTCTCTGGTGGTGGAGCTGGTCGTGTCACAGGAATGCGTGCCGGTAGTGTGTATGGAGGAGCAGGAGGATCCGGGGTTCGCATCTCCAGTTCTTCTCTTTCTCGATCCTACTCTTCTGGAAGCACTGGCTATGGCGCTGGCTTCCATCTGTCTGATGCCATTGACGTGTCTGCGAATGAGAAAGCCACCATGCAAAACCTCAATGACCGTCTGGCCTCCTACCTGGAGAAGGTGCGCACCCTGGAGAGGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGACGGCTCCCTCTGCTCGGGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGTCAAGATCCAGCATGCTACTGGTTTAAACGGAGGGATCTACCTCAGCATTGACAACGCCAAGCTGGCTGCCGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATCGCTGGCTTGAGGAGGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAGAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGAACTCTTGGCAGTGCGTGCCCAGATGACCGGACAAGTCAACGTAGAGGTCGACGCAGCACCACAGGAAGACCTGACAAAGATCATGGCTGAAATCCGTGAACACTACGAATCAGTTGCTGCCAAGAACCGCAAAGATCTTGAGGCTTGGTTCCAGGCCAAGACCGAAACCCTCACCAAGGAAGTTGCTGTGAGCACAGAAACCCTTCAAATATCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTTCAGTCACAACTCAGCATGAAAGCGTCATTGGAAGGTACTCTGGCAGACACACAGGCCCGCTATGCTGCCATGCTATCTGGCTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAGCTGGTGCAGCTTCGTGGTGACCTTGAGCGTCAAAGCCAGGAATACAAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACAAGGTGAGACACAACAACACAATTCCACAACACGCAAGGTGGTAACCATTGTGGAAGAGGTGGTGGACGGCAAAGTGGTCAGCTCATCCTCCCAATCTACGAGCGAGGTTGTGTCTCAAAAGCATTAAGCAACAACAATCCACCTCAAGAGTGCTGAAAAACCAATAAAATGGTCTAACtgtgaa
>TCONS_00028688
ACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGTCAAGATCCAGCATGCTACTGGTTTAAACGGAGGGATCTACCTCAGCATTGACAACGCCAAGCTGGCTGCCGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATCGCTGGCTTGAGGAGGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAGAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGTAAAGTTGTGTTTGGTTCACACTCAGTAGTTCCTTTTGACATGCGAGTCAGGCAAATGCTCAGTGGTTTGCTATTGTACCTTCAGGAACTCTTGGCAGTGCGTGCCCAGATGACCGGACAAGTCAACGTAGAGGTCGACGCAGCACCACAGGAAGACCTGACAAAGATCATGGCTGAAATCCGTGAACACTACGAATCAGTTGCTGCCAAGAACCGCAAAGATCTTGAGGCTTGGTTCCAGGCCAAGACCGAAACCCTCACCAAGGAAGTTGCTGTGAGCACAGAAACCCTTCAAATATCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTTCAGTCACAACTCAGCATGAAAGCGTCATTGGAAGGTACTCTGGCAGACACACAGGCCCGCTATGCTGCCATGCTATCTGGCTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAGCTGGTGCAGCTTCGTGGTGACCTTGAGCGTCAAAGCCAGGAATACAAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACAAGGT

Function

symbol description
krt92 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-363 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDARG00000036834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028686 False 1890 mRNA 0.48 7 5349656 5352199
TCONS_00028687 False 1412 mRNA 0.52 7 5349915 5351982
TCONS_00028688 True 878 lncRNA 0.51 5 5350225 5351542

Neighbor

gene id symbol gene type direction distance location
XLOC_014489 krtt1c19e coding downstream 3724 5339364 ~ 5345932 (-)
XLOC_014488 krt1-19d coding downstream 16872 5324653 ~ 5332784 (-)
XLOC_014487 prf1.3 coding downstream 84501 5259503 ~ 5265155 (-)
XLOC_014486 stx1b coding downstream 94957 5158306 ~ 5254699 (-)
XLOC_014485 gnb3b coding downstream 214311 5106226 ~ 5135345 (-)
XLOC_014491 cyt1l coding upstream 4222 5356421 ~ 5358455 (-)
XLOC_014492 cyt1 coding upstream 10221 5362420 ~ 5364649 (-)
XLOC_014493 krt17 coding upstream 15131 5367330 ~ 5372572 (-)
XLOC_014494 krt91 coding upstream 26364 5378563 ~ 5380770 (-)
XLOC_014495 BX323079.2 coding upstream 63600 5415799 ~ 5415915 (-)
XLOC_014711 CR382300.3 misc upstream 14376491 19728690 ~ 19728755 (-)
XLOC_014483 NA non-coding downstream 255833 5082124 ~ 5093823 (-)
XLOC_014479 NA non-coding downstream 643884 4689329 ~ 4705772 (-)
XLOC_014478 NA non-coding downstream 663025 4678242 ~ 4686631 (-)
XLOC_014477 NA non-coding downstream 788861 4538801 ~ 4560795 (-)
XLOC_014476 CT583670.1 non-coding downstream 868359 4481183 ~ 4481297 (-)
XLOC_014496 NA non-coding upstream 242877 5595076 ~ 5601213 (-)
XLOC_014499 CU207217.1 non-coding upstream 357648 5709847 ~ 5712019 (-)
XLOC_014501 CU207217.2 non-coding upstream 421722 5773921 ~ 5774035 (-)
XLOC_014503 LO018585.1 non-coding upstream 490892 5843091 ~ 5843205 (-)

Expression


Co-expression Network