XLOC_014492 (cyt1)


Basic Information

Item Value
gene id XLOC_014492
gene name cyt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 5362420 ~ 5364649 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028692
ACTCATCCGCTCACTCCTTCTCCAGGCAGAGCAGACGACGACAGCAAGACTCCTTCAAAATGATGTCTTCTTCATCCATCCGCATGTCCTCAGGAGGATCTTCTCGCCTCTCTGTCGGTGGTGGAGCCAGTCGTGTCTCAGGAGTGCGTGCTGGTAGTGTCTATGGAGGAGCAGGAGGATCCGGTGTTCGCATCTCCAGTTCTTCTGCTTCCAGATCCTACTCTGCTGGTGGGGGCGCAGGATTTGGTGGTGGTGCTGGTGCTGGCTTCAACCTGTCTGATGCCATTGACGTGCCAACAAATGAGAAAGCCACCATGCAAAACCTCAATGACCGTCTGGCCTCCTACCTGGAGAAGGTGCGCAGCCTGGAGAAGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGGCCACGCCTAATGCTCGTGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGCAAAGATCCTGCATGCTACTGGTGTAAATGGAGGCATCTACCTCAGCATTGACAATGCCAAGCTGGCTGCAGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATTGTTGGCTTGAGGAAGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAAAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGAGCTCTTGGCAGCACGCACCCAGATGAGTGGACAAGTCAATGTAGAGGTCGATGCAGCACCACAGGAAGACCTGACAAAGATCTTGGCTGATATCCGTGAGCACTACGAGGCAGTTTCTGCCAAGAACCGTAAAGATCTTGAGAGTTGGTTCCAGGCCAAGGTAAAAATCTGTTTTAACATGTCAAATTTGTTTAGCAAGATGGAAATCAAAACCAACAGATGACTTATCTAGCTGCTTTTCTGTTGCATTTCCTCTCACAGAGTGAGTCCCTCAACAAGGAAGTTGCTGTAAGCACAGAAACTCTCCAAACCTCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTACAGTCACAACTCAGCATGAAAGCGTCATTGGAAGGCACTCTGGCAGACACACAGGCCCGCTACACCAACATGTTGAATGGTTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAACTGATACAGCTCCGTGCTGATCTGGAGCGCCAAGGTCAAGAGTACCAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACTACTGTTTCCACAAGCTCAAGCACTACACGCAAAGTGGTAACCATTGTGGAAGAGGTGGTGGATGGAAAAGTGGTCAGCTCATCCTCCAAGGCCACAACCGAGACTAAAACCACTTAAAAGAAATCTTGACAAAAAGAGTTCTCAATCAGTGTGATAAGAAAACCAATAAACTGGTCTCACTGTGAATTTTTGTACTGGTCTTGTTTTGGGGAACATGATTTATACCATGTATAAAAGCAAcccatattataataaatatgaaaattagtttattaatagcAGAGTAAGTTTGCCAATTAGAAGCATAATAGAAACAAATGATTTGTAAAA
>TCONS_00028693
TCTTCTCCTCACTCATCCGCTCACTCCTTCTCCAGGCAGAGCAGACGACGACAGCAAGACTCCTTCAAAATGATGTCTTCTTCATCCATCCGCATGTCCTCAGGAGGATCTTCTCGCCTCTCTGTCGGTGGTGGAGCCAGTCGTGTCTCAGGAGTGCGTGCTGGTAGTGTCTATGGAGGAGCAGGAGGATCCGGTGTTCGCATCTCCAGTTCTTCTGCTTCCAGATCCTACTCTGCTGGTGGGGGCGCAGGATTTGGTGGTGGTGCTGGTGCTGGCTTCAACCTGTCTGATGCCATTGACGTGCCAACAAATGAGAAAGCCACCATGCAAAACCTCAATGACCGTCTGGCCTCCTACCTGGAGAAGGTGCGCAGCCTGGAGAAGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGGCCACGCCTAATGCTCGTGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGCAAAGATCCTGCATGCTACTGGTGTAAATGGAGGCATCTACCTCAGCATTGACAATGCCAAGCTGGCTGCAGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATTGTTGGCTTGAGGAAGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAAAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGAGCTCTTGGCAGCACGCACCCAGATGAGTGGACAAGTCAATGTAGAGGTCGATGCAGCACCACAGGAAGACCTGACAAAGATCTTGGCTGATATCCGTGAGCACTACGAGGCAGTTTCTGCCAAGAACCGTAAAGATCTTGAGAGTTGGTTCCAGGCCAAGAGTGAGTCCCTCAACAAGGAAGTTGCTGTAAGCACAGAAACTCTCCAAACCTCCCGCTCTGAAATCACAGAGGTTAAGCGCACACTCCAGAGTCTTGAAATCGAACTACAGTCACAACTCAGCATGAAAGCGTCATTGGAAGGCACTCTGGCAGACACACAGGCCCGCTACACCAACATGTTGAATGGTTACCAGTTCCAGGTGAGCAGCCTGGAAGAGCAACTGATACAGCTCCGTGCTGATCTGGAGCGCCAAGGTCAAGAGTACCAGATGCTTCTGGACATCAAGACCAGACTGGAGATGGAGATTGCAGAGTACAGAAGACTGCTGGATGGAGAGGCTACTACTGTTTCCACAAGCTCAAGCACTACACGCAAAGTGGTAACCATTGTGGAAGAGGTGGTGGATGGAAAAGTGGTCAGCTCATCCTCCAAGGCCACAACCGAGACTAAAACCACTTAAAAGAAATCTTGACAAAAAGAGTTCTCAATCAGTGTGATAAGAAAACCAATAAACTGGTCTCACTGTGAATTTTTGTACTGGTCTTGTTTTGGGGAACATGATTTATACCATGTATAAAAGCAAcccatattataataaatatgaaaattagtttattaatagcAGAGTAAGTTTGCCAATTAGAAGCATAATAGAAACAAATGATTTGTAAAA
>TCONS_00028694
ACTCATCCGCTCACTCCTTCTCCAGGCAGAGCAGACGACGACAGCAAGACTCCTTCAAAATGATGTCTTCTTCATCCATCCGCATGTCCTCAGGAGGATCTTCTCGCCTCTCTGTCGGTGGTGGAGCCAGTCGTGTCTCAGGAGTGCGTGCTGGTAGTGTCTATGGAGGAGCAGGAGGATCCGGTGTTCGCATCTCCAGTTCTTCTGCTTCCAGATCCTACTCTGCTGGTGGGGGCGCAGGATTTGGTGGTGGTGCTGGTGCGCAGCCTGGAGAAGGCCAATGCAGATCTTGAGCTGAAGATCCGCCAGTTCCTGGACAGCAAGGCCACGCCTAATGCTCGTGACTACAGTGCCTACTATGCAACAATCAGTGACCTCCAGGCAAAGATCCTGCATGCTACTGGTGTAAATGGAGGCATCTACCTCAGCATTGACAATGCCAAGCTGGCTGCAGATGACTTCAGAGTCAAGTATGAGAATGAGCTGAGCATGAGGCAGTCTGTGGAAGCAGACATTGTTGGCTTGAGGAAGGTGCTGGATGAGCTCACAATGACCAGATCTGACCTGGAGTTGCAGATCGAGGGTCTGAAAGAAGAACTGATCTTCCTCAAGAAGAACCACGAGGAGGAGCTCTTGGCAGCACGCACCCAGATGAGTGGACAAGTCAATGTAGAGGTCGATGCAGCACCACAGGAAGACCTGACAAAGATCTTGGCTGATATCCGTGAGCACTACGAGGCAGTTTCTGCCAAGAACCGTAAAGATCTTGAGAGTTGGTTCCAGGCCA

Function

symbol description
cyt1 Predicted to enable structural molecule activity. Acts upstream of or within cell migration involved in gastrulation. Predicted to be located in intermediate filament. Is expressed in EVL; embryonic structure; epidermis; epithelium; and periderm.

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0009611 response to wounding biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042060 wound healing biological_process
GO:0009790 embryo development biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0099513 polymeric cytoskeletal fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0071813 lipoprotein particle binding molecular_function
GO:0071814 protein-lipid complex binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0004859 phospholipase inhibitor activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0055102 lipase inhibitor activity molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko02020 Two-component system
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-991008-6 Predicted to enable structural molecule activity. Acts upstream of or within cell migration involved in gastrulation. Predicted to be located in intermediate filament. Is expressed in EVL; embryonic structure; epidermis; epithelium; and periderm.

Ensembl:

ensembl_id ENSDARG00000092947

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028692 False 1663 lncRNA 0.48 6 5362420 5364639
TCONS_00028693 False 1572 mRNA 0.49 7 5362420 5364649
TCONS_00028694 True 787 nonsense_mediated_decay 0.53 5 5363394 5364639

Neighbor

gene id symbol gene type direction distance location
XLOC_014491 cyt1l coding downstream 3965 5356421 ~ 5358455 (-)
XLOC_014490 krt92 coding downstream 10221 5349656 ~ 5352199 (-)
XLOC_014489 krtt1c19e coding downstream 16488 5339364 ~ 5345932 (-)
XLOC_014488 krt1-19d coding downstream 29636 5324653 ~ 5332784 (-)
XLOC_014487 prf1.3 coding downstream 97265 5259503 ~ 5265155 (-)
XLOC_014493 krt17 coding upstream 2681 5367330 ~ 5372572 (-)
XLOC_014494 krt91 coding upstream 13914 5378563 ~ 5380770 (-)
XLOC_014495 BX323079.2 coding upstream 51150 5415799 ~ 5415915 (-)
XLOC_014496 NA coding upstream 230427 5595076 ~ 5601213 (-)
XLOC_014497 si:ch211-264f5.2 coding upstream 294877 5659526 ~ 5669122 (-)
XLOC_014711 CR382300.3 misc upstream 14364041 19728690 ~ 19728755 (-)
XLOC_014483 NA non-coding downstream 268597 5082124 ~ 5093823 (-)
XLOC_014479 NA non-coding downstream 656648 4689329 ~ 4705772 (-)
XLOC_014478 NA non-coding downstream 675789 4678242 ~ 4686631 (-)
XLOC_014477 NA non-coding downstream 801625 4538801 ~ 4560795 (-)
XLOC_014476 CT583670.1 non-coding downstream 881123 4481183 ~ 4481297 (-)
XLOC_014499 CU207217.1 non-coding upstream 345198 5709847 ~ 5712019 (-)
XLOC_014501 CU207217.2 non-coding upstream 409272 5773921 ~ 5774035 (-)
XLOC_014503 LO018585.1 non-coding upstream 478442 5843091 ~ 5843205 (-)

Expression


Co-expression Network