XLOC_014506 (gsk3aa)


Basic Information

Item Value
gene id XLOC_014506
gene name gsk3aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6059673 ~ 6083784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028711
CCCCATGAGGCTGCGCGGATTCTCGGCGCGTGAGGGAGTGGGTGATCGCTGAGGGTCGCGGAGAACCGCTTATCATCTTTTTTcgtttttaacccaatgtttcACCCAGCACCAGGCCAAGTAGACGAGGGAAGCGCTGATCGTCGACCCACCGCCTCGGTAAACTTTCAGTCAGATATGAGCGGCAGCGGGCGGCCCAGGACAAGCTCGTTCGCTGAGCCTCAGGGGGCGTCCGGAACCGCTGCTGCATCCGCCGGAACCGCCGCTGTCGTGGGGAGCAACGCAGGAAAGCCCGGGGTCTCGCAGGCCTCGGCGGACAGTTCATCTGCCTGCGCGAATTTAAAACTAGCTAGAGACAGTGGGAAGGTGACCACAGTGGTTGCCACCCCAGGCCAGGGCCCGGATCGCCCGCAGGAAGTGTCCTACACTGATATCAAGGTGATCGGTAATGGCTCCTTTGGCGTGGTTTATCAGGCACGTCTCATTGACACTCATGAGTGGGTGGCCATCAAGAAGGTTCTTCAGGACAAGCGATTTAAGAACCGAGAACTTCAGATCATGAGAAAACTGGACCACTGCAATATAGTGAGGCTGCGCTATTTCTTCTATTGCAGCGGAGAGAAGAAGGATGAGGTTTACCTCAATCTAGTGCTGGACTACGTGCCTGAGACTGTCTACAGGGTGGCTCGACACTTTAGCAAGGCTAAAACCATTATTCCCATCTTTTATGTGAAGGTGTACATGTATCAGCTTTTTCGCAGTTTGGCCTACATCCATTCCCAGGGCGTATGTCACCGAGACATCAAACCACAGAACCTTCTGGTGGACCCAGAAACAGCTGTTCTCAAGCTCTGTGACTTTGGCAGTGCAAAGCAGCTGGTGAGGGGTGAGCCTAACGTCTCTTATATCTGCTCGCGATACTATCGCGCCCCTGAGCTTATATTTGGTGCCACGGACTACACCTCCAACATTGACATTTGGTCAGCTGGATGTGTGCTGGCCGAACTGCTGCTGGGACAGCCCATCTTCCCTGGAGACAGTGGTGTGGACCAGCTAGTGGAGATCATAAAGGTACTTGGAACCCCCACAAGAGAACAGATCCGTGAAATGAACCCAAACTACACAGAGTTCAAATTCCCACAGATCAAAGCTCATCCATGGACCAAGGTGTTTAAACCCAGAACTCCTCCTGAGGCGATCGCGCTGTGCTCTCGGCTGTTGGAGTATACGCCAGTGACTCGGCTGTCTCCGCTTCAGGCTTGTGCTCATGCCTTCTTTGACGAGTTGCGCCAACCTGGCACCCGTTTGCCCAGCGGCCGAGAGCTGCCTCCGCTTTTCAACTTCACCACAACAGAGCTGATGATTCAGCCGCAGCTCAATTCCACTCTCATTCCACCGCATGCCCGCGCACAAACCGTAGCATCATCCAACGATGGCTCTGAAGGCTCCGTACAGCCCGGATCTACCCTGACCAACAGCACCTGAGACTCATAAAAACCCACAAAACACACCACAGCATCTGAGCcaccacaacacacacaaacacactcacagtcTCACACTCTCAATACCTCATCCACGGCTTCTTGCTCCACACATTTACAGACCGATTCAGGAGTCACTGCACACAGCCCTGTGTTTGCTGACTGTTGGtcaaacatactgtacacacacactgcCATGTACACGCAACCGCAAACAGAGTAATACCGCTAATATGTGCTTCAGATAatagaggtagtcagtctgaggagAGCTCCAAGCGGCTGCGTAGAAAAGCTCACGTGCATCCATATTGTGTGTTTTGGCGCTCAGATATGATTGGTTATCAGTGGCTAGGGGCGGGTCCTctaattttactattattttaaaatcttaatttattGAAATCGTCATTTACGGTGGATGTTTCCCCTTGAACGCTCGTCTTTTTCGTCATTATGCGAGGTCAAATATGTTTTGAAGGGGAACAAGCTGTCATTGTAGATGATGCATCTTGTTGTAAGTGTCAAAGAGGCGAGACTTAAACGTGGTggttttatacagttattttattgtattttttaaaaacaggagaataatatcttttttttttctggtaattatatttattattttaattcaaccACTCATTCGGACGAACTTTTGAGAAGGCATACATGTAATAATTCCACAGAGCAGTTTGGGGAAACGTTCGACATTATTGTTGACCACAAAGAAGGGAAGGAACGATGTATGCAAGCCAATAGCATATTCATTTTATTGTACCGAACTGAAGTGACTTTATATTCCTGGATGTTTAATTATCATTAGCTCTTAATGATGCTCCAGGTCTAGGCTTAATTTATGCTTGTGAGATTACAAAGTCTTCTTCCGTTCAAAGTCATTTTCAAACGACGGTCTGAAGACTCCACCACGCATCATAATTCAGTGTTTTTTCCGTTTTAGCAATCATTTTTATAGTACATTAAGCTATTCCTACCATTTGAAGGCCTTTGTGGTAGAACAATACTAGTTTGTGAATCAGCACATGAGTTCTTAACGTCAGATGGTCAATCATATCGATTTCTTTACTTGAGAACATGTCTGTTAGTAATAAACTCTATTCTGAGGCCCTCAGGAGCCCTACTTCCA
>TCONS_00028712
CGGCGCGTGAGGGAGTGGGTGATCGCTGAGGGTCGCGGAGAACCGCTTATCATCTTTTTTcgtttttaacccaatgtttcACCCAGCACCAGGCCAAGTAGACGAGGGAAGCGCTGATCGTCGACCCACCGCCTCGGTAAACTTTCAGTCAGATATGAGCGGCAGCGGGCGGCCCAGGACAAGCTCGTTCGCTGAGCCTCAGGGGGCGTCCGGAACCGCTGCTGCATCCGCCGGAACCGCCGCTGTCGTGGGGAGCAACGCAGGAAAGCCCGGGGTCTCGCAGGCCTCGGCGGACAGTTCATCTGCCTGCGCGAATTTAAAACTAGCTAGAGACAGTGGGAAGGTGACCACAGTGGTTGCCACCCCAGGCCAGGGCCCGGATCGCCCGCAGGAAGTGTCCTACACTGATATCAAGGTGATCGGTAATGGCTCCTTTGGCGTGGTTTATCAGGCACGTCTCATTGACACTCATGAGTGGGTGGCCATCAAGAAGGTTCTTCAGGACAAGCGATTTAAGgatagtggaggacagacaggaaagcattcggagcagagagaggggaaggatcagcaggAATTGAACTTGGGTCttcgtgagcaccatggtgctAACCGAGAACTTCAGATCATGAGAAAACTGGACCACTGCAATATAGTGAGGCTGCGCTATTTCTTCTATTGCAGCGGAGAGAAGAAGGATGAGGTTTACCTCAATCTAGTGCTGGACTACGTGCCTGAGACTGTCTACAGGGTGGCTCGACACTTTAGCAAGGCTAAAACCATTATTCCCATCTTTTATGTGAAG

Function

symbol description
gsk3aa Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cell surface receptor signaling pathway; negative regulation of signal transduction; and regulation of neuron projection development. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in axon; cytosol; and nucleus. Is expressed in testis. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha).

GO:

id name namespace
GO:0010975 regulation of neuron projection development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0097192 extrinsic apoptotic signaling pathway in absence of ligand biological_process
GO:0008286 insulin receptor signaling pathway biological_process
GO:0016310 phosphorylation biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0007165 signal transduction biological_process
GO:0030424 axon cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-796 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cell surface receptor signaling pathway; negative regulation of signal transduction; and regulation of neuron projection development. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in axon; cytosol; and nucleus. Is expressed in testis. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha).

Ensembl:

ensembl_id ENSDARG00000029501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028711 False 2634 mRNA 0.48 10 6059673 6083784
TCONS_00028712 True 805 mRNA 0.55 5 6076747 6083761

Neighbor

gene id symbol gene type direction distance location
XLOC_014505 NA coding downstream 76351 5968523 ~ 5983322 (-)
XLOC_014504 LO018585.2 coding downstream 193907 5849008 ~ 5865766 (-)
XLOC_014503 LO018585.1 coding downstream 216468 5843091 ~ 5843205 (-)
XLOC_014502 si:ch211-264f5.8 coding downstream 247354 5779084 ~ 5812319 (-)
XLOC_014501 CU207217.2 coding downstream 285638 5773921 ~ 5774035 (-)
XLOC_014507 cica coding upstream 2000 6085784 ~ 6134802 (-)
XLOC_014508 erf coding upstream 58129 6141913 ~ 6193448 (-)
XLOC_014509 pou2f2a coding upstream 129896 6213680 ~ 6303099 (-)
XLOC_014510 atp1a3a coding upstream 244450 6328234 ~ 6385594 (-)
XLOC_014511 NA coding upstream 508252 6592036 ~ 6596617 (-)
XLOC_014711 CR382300.3 misc upstream 13644906 19728690 ~ 19728755 (-)
XLOC_014499 CU207217.1 non-coding downstream 347654 5709847 ~ 5712019 (-)
XLOC_014496 NA non-coding downstream 458460 5595076 ~ 5601213 (-)
XLOC_014513 NA non-coding upstream 717654 6801438 ~ 6829817 (-)
XLOC_014516 NA non-coding upstream 808931 6892715 ~ 6901336 (-)
XLOC_014517 NA non-coding upstream 817172 6900956 ~ 6915573 (-)
XLOC_014531 BX927401.2 non-coding upstream 1384417 7468201 ~ 7468316 (-)

Expression


Co-expression Network