XLOC_014508 (erf)


Basic Information

Item Value
gene id XLOC_014508
gene name erf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6141913 ~ 6193448 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028714
GGGGGAGGACGAGTGAAGGGGCTGGATTTGAGGAGGAAAAGTTTACAGaggagttttgtgtgtgtgcgtgcgcgatCCTGAACTCGCCGAGAGGAAGAAGTTAATTtcatctctctttctcactcactCTTTCTCAGTTAGCACGACTGCTAACGAAGCGGCTATACTCTCCAACATGAAGACCCCGGGCGATACGGACTGGGCCTACAAGCCGGAGTCGAGTCCTGGTTCCAGACAGATCCAGCTGTGGCACTTCATCCTGGAGCTGCTGCGCAAGGAGGAGTACCACGATGTCATCGCCTGGCAGGGAGATTACGGCGAATTTGTCATCAAAGACCCGGACGAGGTGGCACGACTGTGGGGGGCCCGCAAGTGCAAGCCACAGATGAATTACGACAAGCTCAGTCGAGCGCTCAGatactactacaacaaaagGATCTTGCACAAAACCAAAGGGAAAAGATTCACCTACAAGTTCAATTTTAACAAGCTGGTGCTGGTCAACTATCCATTCATTGACATGGGCTCTGCAGGTTCTGGAGTTCCACAAAGTGCTCCACCTGTCCCATCTGGCGTCAGCACTCATTTCCGTTTCCCTCCATCCACACCGTCGGACGTTCTTTCTCCTAGTGAGGAACTACGCAGTCCTGGTGTCTTCAGTGCTGTGCCTCGACGCATAGCTCGTGGCTCTGTCTCTGACTGCAGCGATGGCACCTCCACCAACTCAGAGCTTGAGGAAACTGGCATGGCTCCCGGCGATGACCGCCCGGCTGACCGTGCCTTCAGAAACCTGCTCCACCCACGCTTGTCCCATGATTCATTGTTCCGTGTCTATGGCGCACCGCCCAACCCAACTGGCCTCCCCAGGAGTGGGCCCCATGTGCCACCACACCGGATGCACCCTGAACCCTTGTCCCCATTCCCAGTGTCCCCTCTCCCAGGCCCTGGGGGCTTGTTGCCTCCTACTCTTTCTCCAGCTCTCTCCATGACCCCTACATCTCACATGCCTTACACACCCTCTCCATCCCTGTCACCCATGCTGGGCTCCCACTTTTCGTTCAATCCAGAGGACATGAAGCGCTACCTGCAAGCTCACACTCAGAGTGTGTACAACTATCATCTGAGTCCTCGTGCATTCCTGCACTATCCCAACATCGTCATCCCCCAGCCCCAGCGCCCAGACAAGGGACTAGGTGGGCCAGCGGGTGTAGGTCCACACCTAACAAGTCACCCTCTGCACCACCAGGCTGATGAGCCTCATCTATCTCCTTTCAAGTTCAAGCTACAGCCACCACCACTGGGCCGCAAACAGAGGGAAGGACCAACCCAGACTGGAGGAGGGCATGCTCCAAATTCTGGAAGTGCTGCTGCTTCCTTCCCATACTGTGGGGAGTCTGGTTCAGCCTCAAACTCCTCCTCGTCTGGGATGATGACCAACAACCCAGCGGCTGGTCCACCAAAGATCAAGGTTGAGCCAATCTCAGACATGGAGTCGGAGGAAGAAGTTGAGGTCACAGACATTAGCGAAGAGGAGCATGAAGATGAGGAATGTGATGTATTTTCCCCTCCCCATCCCAATGGTGGCCTCGCCCCTCCACCCAACCATGATCGTATGACAGATGATGATGATCTTGAGGAAGATGTCTTCAAAACCCCAGCTGCCCCTACCTCAGGGGTTGGGCTGAATCTGTTAGGTCTTAAAGCAGAACCCAGGGAGCTAAACCTTGGCCAGGGTGCTCCCATCAGTCCCGGGGGTACACGCTGCATCCCCTTGAAGCTGCGTTTCAAACGTCGCTGGAGTGAGGATCAGCGAATGGAGGCAGGAACCGAAGAGGCCGAGGACAAGAAGAGTAGGGGTGAGAAGGAGGAACTTTCCCAAGAGGTAGACCTTAAACTGGGAGAGGAAAACGGAGACCGGAAGAGTCCAGAGACTTTGGCTGCGCCCCTGGGGACAGGCCAGAGGAGGGTGAGCTCTGAGCTTCAGCGAGCGACAGCACAGCTGTCTTTAGAAAACAATGTTTGCTGAACAGGACCTGGTCAAACACATAAACTTACCAACCCAGAGCTGTCCTCCTTAAAGCCAGAAGGCTATTGTTGCTCTCAGAAATTATGTGAAGACCATCCATTTAGAAAGTGCAGATGACCAAATCATCTTTCTGCACATGCAGGTTCACTCACTTCAGAATGTTGTgacactaaaaataaatactgacctgttttgtttttttgttttttatagaaATTGAAGTAATCAGGCTCCTTCCCAAAGTTTATCCAGAGCCCCTTGCTTACCGAACCCATTCCTGTCTGTTTGATGTGTTAGACTAACACCATCCCTCTTGTCTCGTTGAAGtcttgaacactttttttttttacccccaaAAAAGCTCTCCAATAGGATCTAATGGTCAACCCAACACCTTTTCATCATATTCAAGAGTTTACAGAAGTGCCTAAACAGGACATTGATGCATCCCCGTTAAATATGAGCAGAGATGATGATCATGAATTGGTCTCAAAGTCTTTTAATTCATGCTCATGAAAATTAGGATCAGTTGGCAAGATGCTTTAAAATTAACACTCTTGGATGAAGTGGAAAGTTACAAGGAAGGAAGGATGCTGGCTGACACCTCCCCCCTAAATACTCAATCATAGTTCTCAAACATTGTGGTTACAGACGCTCTCCTTTTTTGTTTTGCATACCAAGATGAAAGTCCCAGACGTTTTGCAGAACCACCTTGCCTTTCACTTTTAAACCATGACTCTTCATGTCACTGCCTTCAGAGAAATTGACGCTAGCGTGCCACCAGCCGCTATCACTGCCGGCTCTAAACATCAGCTGCTCAACGGACTCTGCCGGCTAACGGGACCACTCAGCAACCTCAACGTATCTTAAGACATGTATATACTTTGGGGGAAACATTTTATATACGTTCGATCATCTTCATGACCACCAGCTGGAtgaaaaatgtgatttattcctgctccaatttatttatttattttttcataatgaAGTTTCAACCCCAAGGGAAAGTAATAGGGACATTGGGGCAACATATCAAAGGGCGCTCTCTGATTTTTAGCTACGTAATCATCCCTAAAACCATCTATACAGTCCTATTTTGTAAAGAATGCAAATATTCATCGTGTGTTGCACACCCCTCACATCCAATAGGTTGTCTTTTGAATATAACGCCTTCAAATTAACAAACATTTGTGcctttaaatggaaaaaaaaacgaCCGCCCAATTCTTTTAAATGGGTTGTTTTATCGACTCGCATACAGGAGAGGCCTTAGAAACATGACCTcaaacactgcttttatgccttatTTAGTTTTGTACGTTTAAAAGAGACTATCCTAAATAAGATTTGCATTTAGAGTCCGTATATTCTCACGATAGCCGTATATATTTGATAAAAGAACAAACGCTGGTTTtgatacaaattatatttcaGAAGGTAAATCTATATGTAAGGAAGACCATTAGTTTCAGGGCACTACAGTTCTGTACTGTGAAGCAAAAGTGTTGTTATAGATGAAGCTAAACTTAACTGACCAATAGTTTCAAAAACCCTGAACGGCTTTGCCTTGTAAGGTCTACGTAAAAGGTTTAACGCGTCCAGCCGTGTTTGCATTCTCCCGCTCAGTCTTGCTGCAGTGTTTTAGTTGCAGGAGGCTGTGTTTTCTCCGTGATGATCAAGAACAGCTATTACATCCTATTTGGCTAAGCGTTTGGCTACGTCAGCTCTATTTGTAGCAAAATGCAAGGACTCTTGTAGGAAATGACGTCACGACCATGTCCTTCAGAAAGGGACCtcattttattaaactgacaACTAAAAAGTGGACATTTAGCCCTCATCTGAGGAGGACAGATAGGACCTGACAGACTTAACACACACTTTTCCCCCCCTCTTTTAACTTTTTCGAGTTCGTTTGGCGGCCTTACACCGGTTCAGTATCTGTATTTCAACTGACAGCTGCCTTATTTGTTAAATACGTTTTTCTTCTTGCTCTTTCTTCAATATAAACAgtgctgttttattatttttttatttttcgctTATATTaccatttatcatttttaatgttGATATTATCGCTGGTATTCGTTTGTACCCCCTTACCTGAATTTTAACCTCTCGagatgaacattttaataaagcGTACTCCTCTACCCTCTTTGATAACCGTGATAGAAAAGTGCTCTGGCTTTGTATTAATGATGGTTTTAGTTGTGACCAGATGGAGAGGGAGGGGGTGACATTATGCTATCacgttatttttatttgaatattacgTTTTTTGGTTgtgtacatatataaatatatattttccatttCGAGGGGATGATGTAAGAAAAGACAAATATTTCTTTATCGTGTTCAAGGTCTCTCTTTTTGCTTCTTTCTTATTAAAGCTTTCCATCTGTCTCTCAGCGGTTATGTAATGCTTTGTAAAGAGAGACAAAACTTGACGTTACAAGGAACCATgtatactttagtttctcatgtGGTTTCTTTTGCTCTTGTAATTAAAACTGTAATCAGGGTTCATTAAAACAGGTAAAAACGG
>TCONS_00028715
atCCTGAACTCGCCGAGAGGAAGAAGTTAATTtcatctctctttctcactcactCTTTCTCAGTTAGCACGACTGCTAACGAAGCGGCTATACTCTCCAACATGAAGACCCCGGGCGATACGGGGTTTGCCTTCCCAGACTGGGCCTACAAGCCGGAGTCGAGTCCTGGTTCCAGACAGATCCAGCTGTGGCACTTCATCCTGGAGCTGCTGCGCAAGGAGGAGTACCACGATGTCATCGCCTGGCAGGGAGATTACGGCGAATTTGTCATCAAAGACCCGGACGAGGTGGCACGACTGTGGGGGGCCCGCAAGTGCAAGCCACAGATGAATTACGACAAGCTCAGTCGAGCGCTCAGatactactacaacaaaagGATCTTGCACAAAACCAAAGGGAAAAGATTCACCTACAAGTTCAATTTTAACAAGCTGGTGCTGGTCAACTATCCATTCATTGACATGGGCTCTGCAGGTTCTGGAGTTCCACAAAGTGCTCCACCTGTCCCATCTGGCGTCAGCACTCATTTCCGTTTCCCTCCATCCACACCGTCGGACGTTCTTTCTCCTAGTGAGGAACTACGCAGTCCTGGTGTCTTCAGTGCTGTGCCTCGACGCATAGCTCGTGGCTCTGTCTCTGACTGCAGCGATGGCACCTCCACCAACTCAGAGCTTGAGGAAACTGGCATGGCTCCCGGCGATGACCGCCCGGCTGACCGTGCCTTCAGAAACCTGCTCCACCCACGCTTGTCCCATGATTCATTGTTCCGTGTCTATGGCGCACCGCCCAACCCAACTGGCCTCCCCAGGAGTGGGCCCCATGTGCCACCACACCGGATGCACCCTGAACCCTTGTCCCCATTCCCAGTGTCCCCTCTCCCAGGCCCTGGGGGCTTGTTGCCTCCTACTCTTTCTCCAGCTCTCTCCATGACCCCTACATCTCACATGCCTTACACACCCTCTCCATCCCTGTCACCCATGCTGGGCTCCCACTTTTCGTTCAATCCAGAGGACATGAAGCGCTACCTGCAAGCTCACACTCAGAGTGTGTACAACTATCATCTGAGTCCTCGTGCATTCCTGCACTATCCCAACATCGTCATCCCCCAGCCCCAGCGCCCAGACAAGGGACTAGGTGGGCCAGCGGGTGTAGGTCCACACCTAACAAGTCACCCTCTGCACCACCAGGCTGATGAGCCTCATCTATCTCCTTTCAAGTTCAAGCTACAGCCACCACCACTGGGCCGCAAACAGAGGGAAGGACCAACCCAGACTGGAGGAGGGCATGCTCCAAATTCTGGAAGTGCTGCTGCTTCCTTCCCATACTGTGGGGAGTCTGGTTCAGCCTCAAACTCCTCCTCGTCTGGGATGATGACCAACAACCCAGCGGCTGGTCCACCAAAGATCAAGGTTGAGCCAATCTCAGACATGGAGTCGGAGGAAGAAGTTGAGGTCACAGACATTAGCGAAGAGGAGCATGAAGATGAGGAATGTGATGTATTTTCCCCTCCCCATCCCAATGGTGGCCTCGCCCCTCCACCCAACCATGATCGTATGACAGATGATGATGATCTTGAGGAAGATGTCTTCAAAACCCCAGCTGCCCCTACCTCAGGGGTTGGGCTGAATCTGTTAGGTCTTAAAGCAGAACCCAGGGAGCTAAACCTTGGCCAGGGTGCTCCCATCAGTCCCGGGGGTACACGCTGCATCCCCTTGAAGCTGCGTTTCAAACGTCGCTGGAGTGAGGATCAGCGAATGGAGGCAGGAACCGAAGAGGCCGAGGACAAGAAGAGTAGGGGTGAGAAGGAGGAACTTTCCCAAGAGGTAGACCTTAAACTGGGAGAGGAAAACGGAGACCGGAAGAGTCCAGAGACTTTGGCTGCGCCCCTGGGGACAGGCCAGAGGAGGGTGAGCTCTGAGCTTCAGCGAGCGACAGCACAGCTGTCTTTAGAAAACAATGTTTGCTGAACAGGACCTGGTCAAACACATAAACTTACCAACCCAGAGCTGTCCTCCTTAAAGCCAGAAGGCTATTGTTGCTCTCAGAAATTATGTGAAGACCATCCATTTAGAAAGTGCAGATGACCAAATCATCTTTCTGCACATGCAGGTTCACTCACTTCAGAATGTTGTgacactaaaaataaatactgacctgttttgtttttttgttttttatagaaATTGAAGTAATCAGGCTCCTTCCCAAAGTTTATCCAGAGCCCCTTGCTTACCGAACCCATTCCTGTCTGTTTGATGTGTTAGACTAACACCATCCCTCTTGTCTCGTTGAAGtcttgaacactttttttttttacccccaaAAAAGCTCTCCAATAGGATCTAATGGTCAACCCAACACCTTTTCATCATATTCAAGAGTTTACAGAAGTGCCTAAACAGGACATTGATGCATCCCCGTTAAATATGAGCAGAGATGATGATCATGAATTGGTCTCAAAGTCTTTTAATTCATGCTCATGAAAATTAGGATCAGTTGGCAAGATGCTTTAAAATTAACACTCTTGGATGAAGTGGAAAGTTACAAGGAAGGAAGGATGCTGGCTGACACCTCCCCCCTAAATACTCAATCATAGTTCTCAAACATTGTGGTTACAGACGCTCTCCTTTTTTGTTTTGCATACCAAGATGAAAGTCCCAGACGTTTTGCAGAACCACCTTGCCTTTCACTTTTAAACCATGACTCTTCATGTCACTGCCTTCAGAGAAATTGACGCTAGCGTGCCACCAGCCGCTATCACTGCCGGCTCTAAACATCAGCTGCTCAACGGACTCTGCCGGCTAACGGGACCACTCAGCAACCTCAACGTATCTTAAGACATGTATATACTTTGGGGGAAACATTTTATATACGTTCGATCATCTTCATGACCACCAGCTGGAtgaaaaatgtgatttattcctgctccaatttatttatttattttttcataatgaAGTTTCAACCCCAAGGGAAAGTAATAGGGACATTGGGGCAACATATCAAAGGGCGCTCTCTGATTTTTAGCTACGTAATCATCCCTAAAACCATCTATACAGTCCTATTTTGTAAAGAATGCAAATATTCATCGTGTGTTGCACACCCCTCACATCCAATAGGTTGTCTTTTGAATATAACGCCTTCAAATTAACAAACATTTGTGcctttaaatggaaaaaaaaacgaCCGCCCAATTCTTTTAAATGGGTTGTTTTATCGACTCGCATACAGGAGAGGCCTTAGAAACATGACCTcaaacactgcttttatgccttatTTAGTTTTGTACGTTTAAAAGAGACTATCCTAAATAAGATTTGCATTTAGAGTCCGTATATTCTCACGATAGCCGTATATATTTGATAAAAGAACAAACGCTGGTTTtgatacaaattatatttcaGAAGGTAAATCTATATGTAAGGAAGACCATTAGTTTCAGGGCACTACAGTTCTGTACTGTGAAGCAAAAGTGTTGTTATAGATGAAGCTAAACTTAACTGACCAATAGTTTCAAAAACCCTGAACGGCTTTGCCTTGTAAGGTCTACGTAAAAGGTTTAACGCGTCCAGCCGTGTTTGCATTCT
>TCONS_00028716
CACGGAGTGAGTGGAAAAAGAAAAAGTCCGtggaaagagagggagaaaagTGGATCGGGCATTTCAGCCTTCTCGTTTGTTTTGATTCAGTCTGCTTCGCCTCGTGTTTCAGCGTGAAGGCTCGAATATGCAACTTCGCAGCGTCTATGAAGTAATCAGGAGTTCAGCGCGGACACGGTGCTCCTCCATCGGCACGACGCGCTCCGATATCTGACCGTAAAAGAGCGAGTCTGTCCGGCCACAAGGCAACAACTAGCGTCCTCCACGTTGAggaggaaaagcaaaacagctaaACTACAAACAAACCGGGGGAGGACGAGTGAAGGGGCTGGATTTGAGGAGGAAAAGTTTACAGaggagttttgtgtgtgtgcgtgcgcgatCCTGAACTCGCCGAGAGGAAGAAGTTAATTtcatctctctttctcactcactCTTTCTCAGTTAGCACGACTGCTAACGAAGCGGCTATACTCTCCAACATGAAGACCCCGGGCGATACGGGGTTTGCCTTCCCAGACTGGGCCTACAAGCCGGAGTCGAGTCCTGGTT

Function

symbol description
erf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human ERF (ETS2 repressor factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-010724-17 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human ERF (ETS2 repressor factor).

Ensembl:

ensembl_id ENSDARG00000063417

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028714 False 4583 mRNA 0.46 5 6141913 6193141
TCONS_00028715 False 3587 mRNA 0.48 5 6142850 6193067
TCONS_00028716 True 552 mRNA 0.52 2 6152795 6193448

Neighbor

gene id symbol gene type direction distance location
XLOC_014507 cica coding downstream 7111 6085784 ~ 6134802 (-)
XLOC_014506 gsk3aa coding downstream 58129 6059673 ~ 6083784 (-)
XLOC_014505 NA coding downstream 158591 5968523 ~ 5983322 (-)
XLOC_014504 LO018585.2 coding downstream 276147 5849008 ~ 5865766 (-)
XLOC_014503 LO018585.1 coding downstream 298708 5843091 ~ 5843205 (-)
XLOC_014509 pou2f2a coding upstream 20232 6213680 ~ 6303099 (-)
XLOC_014510 atp1a3a coding upstream 134786 6328234 ~ 6385594 (-)
XLOC_014511 NA coding upstream 398588 6592036 ~ 6596617 (-)
XLOC_014512 pvrl2l coding upstream 412749 6606197 ~ 6774871 (-)
XLOC_014513 NA coding upstream 607990 6801438 ~ 6829817 (-)
XLOC_014711 CR382300.3 misc upstream 13535242 19728690 ~ 19728755 (-)
XLOC_014501 CU207217.2 non-coding downstream 367878 5773921 ~ 5774035 (-)
XLOC_014499 CU207217.1 non-coding downstream 429894 5709847 ~ 5712019 (-)
XLOC_014496 NA non-coding downstream 540700 5595076 ~ 5601213 (-)
XLOC_014516 NA non-coding upstream 699267 6892715 ~ 6901336 (-)
XLOC_014517 NA non-coding upstream 707508 6900956 ~ 6915573 (-)
XLOC_014531 BX927401.2 non-coding upstream 1274753 7468201 ~ 7468316 (-)

Expression


Co-expression Network