XLOC_014509 (pou2f2a)


Basic Information

Item Value
gene id XLOC_014509
gene name pou2f2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6213680 ~ 6303099 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028717
CACAAAACAAGCATCAAGTGATTAGTTTTCATGCATATTTAAAAGATATTGCTTGGAAGATCCCGACTATCCGTCTGTGTGTCAGTCCGAGATAGAGCATCCCTGAGGAAGCAGTAATGACTGAGAGGCacaataccaaaaatgtaaagcTAGCTTGAGCAATTTATTTACGTTATAGctacattttaaaccaaataatattACCAAAAAGAAACAACCTCACAAAAACAGTCTACTTGACAAACAGCAACCAAAGAAACTCAAGACAAGCGCCAAAAACAAGAGACCATAGAAGCAAAGCCCAGACGACGACGGATCATGTTTGTTCCCTTGCCGGTGCCGTTGGTGTTTCAGAGAACCGCTCCTGATTTCAGCGCCTGGCGACTCAAGTCTCCGCTGCCTCTGCGCTCCGGTAACTCCGTCGATATCAGGATGTCTAAAGCTATGGAGGATGACAAGATGGGAACTGAACTTCCAGTGGACAGTACAGaCTCTGAGAGGAACAGTCCAGAGGCCAGCGATCAGACCCAGCCAATGAAAACAAGTCCTTTCTGCCTTTCCCCTGCACCCAGCAACACAAAGgTGAAAGGAGAGGAAGCCGCTGAGATGACCAGTGTTCAcgctcctccacctcctccagcTCAGCCGGCTCTGCCACACACACAGCTCATGCTGGCAGGCAGTCAACTCGCTGGGCTGGCCGCTCTCCTCCCGGCGCAGCAGCAGTTGTTGTTGCAGCAGGCTCAAGCGCAGCTCTTAGCCGCAGCCGTGCAGCAGTCCAACGCTGCGCATGCCGCCCACGCAGCCGCCGCAGCCAATCAGCAGCAGTCGCAGCAGCAGGCCAATCAGGCTGCAGCACAAGCCCAGTCTCAAGCCAAAGCTGAGCAAGCACCGCCTCCGCTGCTGTCACAGCCCATCCAGCTCACTGCCCAGgACATTCAGCAGTTGTTGCAGTTGCAGCAGTTGGTCCTGATGCCTGGTCATCCTCTGCAGTCTCCGGCTCAGTTCCTGCTGCCTCAAGCCCAGGCACAGCAGGGTCAGCAAGGTTTGCTCTCGACACCAAATTTGATTCCTCTACCTCAGCAAAGCCCAGGGAGTCTCCTGACCACTCCACCTAGACTGGGCCTTCAAGCACAGAGGGAGAAGAGTGTGGAGAGTGTGGTCAGCTCCGCCCCTTCCTCAGCCCCGCCCATGAGCTCCGCCCCCACAGTGACGCCACACCCAGAGGAGCCCAGTGACTTGGAGGAACTCGAGCAGTTCGCCAGAACATTCAAACAGAGGAGAATTAAACTCGGCTtcacacagGGTGATGTGGGTATGGCCATGGGTAAACTGTACGGCAATGACTTCAGTCAGACCACCATCTCCCGCTTCGAGGCTCTCAATCTCAGCTTCAAGAACATGTGCAAACTCAAGCCCCTGCTGGAGAAATGGCTGAGcgatgcagAAACCATGGCTATAGACAACATGCTGCCCAGCCCCAGCTCTCTTTCCTCTCCTCTGCTGGGTTTTGAAGGTTTGCCTGGACGCCGCCGCAAGAAACGCACCAGCATCGAGACCAACGTCCGCATCGCCCTCGAGCGCAACTTCATCTCGAACCAGAAGCCTACCTCTGAAGAAATCCTGCTGATGGCCGAGCAGCTCAACATGGAGAAAGAGGTCATCCGCGTCTGGTTCTGCAACCGGCGGCAGAAAGAGAAGCGTATAAACCCCTCCAGTGCCACCCCTCCACTGCCCACTCAGCCTACAGCACCGACGCACAAAGCTCCTTGCTACAGCCCGCAcatgATGTCCAGTCAGGCACTGGCTCAGGTTGCGACCAGTCTCAGCACAACAGCGGTCAGTCCCACCCCTTCTGTGGCTTGTCCTCTCACCAGCAGTGGACACGCTGCCATGAGCTCCGCCCCTTCCTCCGTGACTCCGCCTCCTCTCAGCACAGTCAGCCCCACCCCGCCCAGCCTCAGCAGCCCTGGCCTCAACACAGGGAACACAATGATGGGTGTAAGCACAGGAATGAACCAGGCCCTCATCAGCAGCAACCCACTGGCCACAATGCAAGCTCTGGCTGCCAGTGGTGGCCAGATGTCCATTTCCGCTCTTGATGGCAGCGGTCAGATGTTCCTGGGTGGAGCTGGAGGTCCTGGAGCTGGACTTCGCCAGTCTCTCTTCCTGAACCGGCCCACTTTACTGCCCCTGGCGAGGGGCGCGGGCATGGGTCTGATGGGCCACAGGGCCTCCCCTCCTCCTGGCCCAGACTCCTGCTCCATCTCCCCCTGCTCAAGCCCCGCCTCCTTCTGCTCATTAGGTGAAGCGTCACCGCCCCATCTGGGCGGAGCTATGGCAGAGTGACGCCCACAACGACCTGCTGCACTCGAGGGGAGTCAGAGGGGCGGAAGAAAGAAGACAAACACGACTCGCCTTTTCAACCAAAGCCATCTCTCACTCCCTCCATTTCTCTCTtgtgctctctctctttcataatgtcttttaatgCCAAAAATACAGAGAAATGAGCAGAAGAGAACAGGGATGAGGAGAGAACTGGATAAAGGGGGACTGTTTAAACCAAAAAATTGATCTATATGGAGAGGTGGCTTCAACGGAGCTACTTTAAGAATGTACATTTATTCCTTTCTGAGTGGGACAAACCTACACGAATAGATGAATTTGAGGGCAGGGTtgagagccaaaaaaaaaaaaactttatgaatgaataacaacaaaaaaagaaaacgggTGGCAGCGAATGGAACAAAGGAAGGACATCTGACAAGTGTCACTGGACGGTAGAAAGAGAAACCAAAAATAAACACATGGAAGAAGAACGGAGAGACTCACAAAGACAAAAAATGCCAAAACCAAAATACcaaaaaccaaaaccaaaaatcGGAGAGAAAAGCTTTACCTAAGACTTTGAACCCTGACTTGTCCAGGATCAGATTAACTCTACACAACACCAAAAACCTTTTTTCCTCATCGTTTGAATGATTTCTTCATGCAcccttataatttttttcttttcgactttttgtaaatgtattcctCAATCTACCTCTGCTATCAACTATTTCGATTTCCTCATTCTTTTTCATTCGCATTTTCGTTTTCTCACGAAATCACAACAACAGATGAATTCAAAAGGGATTTCTCCCACACCTTAGACAgtattacacacaaacacacacatatacactgaaACTTACTGTGATATGCATCCATGATTCCCACCATTGATCatcagctggaaaagcatccatGCCTCAAACTTTGACACACTTTTCTTGGATACCAAAGCATTCATCTGGCCTTTTGCGTCAGCTGAAAAGTGCTCAGACGATAAGACCTCAGACATACGCAATGAAAATTTTATCATAAACCCCCTGAGCCCCCAAACCCCTGCCCTCCATCCTCTCTGGACCCCTCTCCTGTGCCTCGGTTAAATCGTGCGATGAAAAGAGCCAAACGACAGGCAAGAGGAGCAGCGACTGAAGAGGATCCGAGGGAAATGTGCAGGGGGAAACCCAACAAACAAGAAGCGGAGGGAAGACATGTGATGTCACCatcttttcttattttatttttccaacacacggattaaaccaaaaatgaaaccaaaaccaaaaccaatGGACTAAAACTGAACTTTGCTCTATGGAATGAAACCAAAAACCAGGAGTGGACCACAGGAGGTGCACGAGGAGGATGTTTTTAGAGTAGCAAGACTCAATGACGTAAAAAGACTCGACGTGGCTTTTGATCATTCCTTCACCTCCTCCCTCCTTTCCGTTAAGTCGATGTTTTCGCTCTCCTTCCTGGACGGGAGAATATTTATTAACCTCATCGAACTGAacttcagaatatatatatatacatatatattttgttttattgctttagtTTTTTCCTCTTGGTCTGTCTGTTTATGCCGTATGACTCGTCTCATTGCTTTATATTTTTGGGATAATGGGGTGACGTATTGCCTATTTTCATATTTCGTGTGTTTCGTCATTTTGATCGTGCCGTGGGGGGGGAGGTTTCCCTCATCAGGCGGTTTGAAACAATACTGTGAACATGTAGCTTCCAAGTTTTGCTTCGATTGCGAATGTTGTGAAACAATAAGCCAAAACTGAAGAAATACCAAAtcgaaaacctttttttttttcgttcttgtcgttgttgttgacaccaaatagCAACTTAACCAATGCACAACGCATGGAGAAGGAGCATATTGGTGCTAGGTCTCATCGAGGAGAGATTGTGTGTGAGACGTATGTGTTTGTGAGAACATGGAAGCTCATCTCCAGCATGGAAACCAAACCGAAACACGACCGCTAAGCCAATGTAACTTTCACTCGGCGGAACGTTTTTGATTATGTGACCTTAGATGCATTCAAAAACGCAGACAAACGAGAAATGTAGAGGATGGGGCGGGGTGGGGCGGGGGTTTCAAATCAACTGGAGATCCAGTTGACCTTACACTTCTAGAGGGAATGTACCTGTTAGTGCTTTGATAGATTttgtaggaaaaaaaaatctatgttcaACTGCTTACTAttgctaatgtaaaaaaaaaggctGTGATAAAATAGTCCTTATGAAATGTTGATGATAATGACTTGATTTTAGACCAAAAGCTTTAAACCGtctctctttgattttttttccctcgaaaatttgtatttattgtgtGAGGGGAGGGTGTATCGATGATTTATATGTTTCCAACTCTTCATCTTATTTATTggcttatttatgtatttatagcgATTTAATTTATCGATTTTTGTTAAGTCTTCGTAAAACAAAACTGGGCAACTGTGGGGTAGCTTCGAAAAACTAGAAAAAACTAAAGACACGTTggtgtttttaaaaccaaaactgaCTGTTGTTTCAATGGGCACCTTTCAAAAAGGACGTGTCCGCCACTTTTGACGAGAGATCGAAAAAACTGGGCTAATTTTATGCATAACTCTTGTTCCAAATTTTCGTTTCGTTTAGAATTTACTCCATTTTTTTTAGATGCGTTTGATGAGGGAAAACGAGTGAGAGAGATACGCTTCTGCATATACCTCATGTTTAATTAGAAATGCCAAATAGATGGAAAAAAAGCTTTAAGAATTTGACAAGGGGAGCAGAGGAGATGTTGCTCAGGAGAGGGTCTTTTTAGCGTCTTTTTCGCGTGAGTATAAGGGTTCACAGACTTTCCCCAGATTGTCCGGTTCAGACGTCCGGCCCACGACAGAACAGTTTATGgcaggttttttgttttttacattggtTTTCTATGTGTACGTTGCTCATGTGATTATTGGTTTTTGTATATATCTCTTCTATGTGTGCGTTGGTGTGTGTGGACGGCTCTGCAGTAGAGGGCCCCGAATGATACCAAAGTTAAACCTCTACCGCGGGACCACGCACATGCCAGACGCGCTCAAATGCATGGACGTTCTTGTAGACATGCACACGCAAAACTGTTCATCAACCATATACAGCAGGAATGTCCATGACTGCATCGTTGTCATTGTGCAGTATATGTTCTGTTGTTTTGCATTGCCAAATAGAGGTCAATCTCACTTTTAAATAGAAATATCTGAATTTTCTACCTTAGCTACATTTTAATTAGAACGTAGAACACTTATTTTGACAGTTTAAAATGAATATCAAATGcaacatttagttttgttttctcttCAACTACTACAGCTTCAGTCCAAAGGTAACTGATTAGGTCAACAAAGGGAGATTCTCTTCCTCAAACCTCAAGAGTTGAAACCAAAGAGTTCTGCCGTAACATGTTCATCAGGAAACATGCGAATGCTTTTTCTTTTGTCCTCAGAACACAAACCCGCTTCACTTTTTGACATTTGATGTTGACGATGACGATGCCAACTACACGACTGTGGTCACTTTCGACTCTGTATCTGCGTTTTTTTGCGAAGATCCTTTTTCCTCTCTGTCGGTGTGTGTCTCGCTCTTACCTCAGAAGCTCTTCATGGAATTTGAATCTGGATTTTTCGTTCAGAACTGTTGAACTGTCTGTTACTCATCGCTCTCTGTGTGCCTGTTGTATGGGGTGGGAACGGGGTGGGCAAAGATGGGAAGGGGGCAAACAGCCAATAAGTGTTAGGATTAAAGTGCAACTTTAGA
>TCONS_00028718
ATGAAAACAAGTCCTTTCTGCCTTTCCCCTGCACCCAGCAACACAAAGgTGAAAGGAGAGGAAGCCGCTGAGATGACCAGTGTTCAcgctcctccacctcctccagcTCAGCCGGCTCTGCCACACACACAGCTCATGCTGGCAGGCAGTCAACTCGCTGGGCTGGCCGCTCTCCTCCCGGCGCAGCAGCAGTTGTTGTTGCAGCAGGCTCAAGCGCAGCTCTTAGCCGCAGCCGTGCAGCAGTCCAACGCTGCGCATGCCGCCCACGCAGCCGCCGCAGCCAATCAGCAGCAGTCGCAGCAGCAGGCCAATCAGGCTGCAGCACAAGCCCAGTCTCAAGCCAAAGCTGAGCAAGCACCGCCTCCGCTGCTGTCACAGCCCATCCAGCTCACTGCCCAGgACATTCAGCAGTTGTTGCAGTTGCAGCAGTTGGTCCTGATGCCTGGTCATCCTCTGCAGTCTCCGGCTCAGTTCCTGCTGCCTCAAGCCCAGGCACAGCAGGGTCAGCAAGGTTTGCTCTCGACACCAAATTTGATTCCTCTACCTCAGCAAAGCCCAGGGAGTCTCCTGACCACTCCACCTAGACTGGGCCTTCAAGCACAGAGGGAGAAGAGTGTGGAGAGTGTGGTCAGCTCCGCCCCTTCCTCAGCCCCGCCCATGAGCTCCGCCCCCACAGTGACGCCACACCCAGAGGAGCCCAGTGACTTGGAGGAACTCGAGCAGTTCGCCAGAACATTCAAACAGAGGAGAATTAAACTCGGCTtcacacagGGTGATGTGGGTATGGCCATGGGTAAACTGTACGGCAATGACTTCAGTCAGACCACCATCTCCCGCTTCGAGGCTCTCAATCTCAGCTTCAAGAACATGTGCAAACTCAAGCCCCTGCTGGAGAAATGGCTGAGcgatgcagAAACCATGGCTATAGACAACATGCTGCCCAGCCCCAGCTCTCTTTCCTCTCCTCTGCTGGGTTTTGAAGGTTTGCCTGGACGCCGCCGCAAGAAACGCACCAGCATCGAGACCAACGTCCGCATCGCCCTCGAGCGCAACTTCATCTCGAACCAGAAGCCTACCTCTGAAGAAATCCTGCTGATGGCCGAGCAGCTCAACATGGAGAAAGAGGTCATCCGCGTCTGGTTCTGCAACCGGCGGCAGAAAGAGAAGCGTATAAACCCCTCCAGTGCCACCCCTCCACTGCCCACTCAGCCTACAGCACCGACGCACAAAGCTCCTTGCTACAGCCCGCAcatgATGTCCAGTCAGGCACTGGCTCAGGTTGCGACCAGTCTCAGCACAACAGCGGTCAGTCCCACCCCTTCTGTGGCTTGTCCTCTCACCAGCAGTGGACACGCTGCCATGAGCTCCGCCCCTTCCTCCGTGACTCCGCCTCCTCTCAGCACAGTCAGCCCCACCCCGCCCAGCCTCAGCAGCCCTGGCCTCAACACAGGGAACACAATGATGGGTGTAAGCACAGGAATGAACCAGGCCCTCATCAGCAGCAACCCACTGGCCACAATGCAAGCTCTGGCTGCCAGTGGTGGCCAGATGTCCATTTCCGCTCTTGATGGCAGCGGTCAGATGTTCCTGGGTGGAGCTGGAGGTCCTGGAGCTGGACTTCGCCAGTCTCTCTTCCTGAACCGGCCCACTTTACTGCCCCTGGCGAGGGGCGCGGGCATGGGTCTGATGGGCCACAGGGCCTCCCCTCCTCCTGGCCCAGACTCCTGCTCCATCTCCCCCTGCTCAAGCCCCGCCTCCTTCTGCTCATTAGGTGAAGCGTCACCGCCCCATCTGGGCGGAGCTATGGCAGAGTGA
>TCONS_00028719
GGTCAGAAAAGAAGGATTGAGGGATCGGATGACGCAGTTAGTAGAtggattattattaaaatgatgaaGCCAGATTAATTGCTGCACTTCTGCTGAATCCgTGAAAGGAGAGGAAGCCGCTGAGATGACCAGTGTTCAcgctcctccacctcctccagcTCAGCCGGCTCTGCCACACACACAGCTCATGCTGGCAGGCAGTCAACTCGCTGGGATCCTGCTTGCTTAGGCAAGGGTCTGCTGTGCTGCTTTTGGTGACTGttcttctttccttcttttttcttcACCCATTGCTCCCGTCTGCGCTGCTTTCAGCTGGCCGCTCTCCTCCCGGCGCAGCAGCAGTTGTTGTTGCAGCAGGCTCAAGCGCAGCTCTTAGCCGCAGCCGTGCAGCAGTCCAACGCTGCGCATGCCGCCCACGCAGCCGCCGCAGCCAATCAGCAGCAGTCGCAGCAGCAGGCCAATCAGGCTGCAGCACAAGCCCAGTCTCAAGCCAAAGCTGAGCAAGCACCGCCTCCGCTGCTGTCACAGCCCATCCAGCTCACTGCCCAGgACATTCAGCAGTTGTTGCAGTTGCAGCAGTTGGTCCTGATGCCTGGTCATCCTCTGCAGTCTCCGGCTCAGTTCCTGCTGCCTCAAGCCCAGGCACAGCAGGGTCAGCAAGGTTTGCTCTCGACACCAAATTTGATTCCTCTACCTCAGCAAAGCCCAGGGAGTCTCCTGACCACTCCACCTAGACTGGGCCTTCAAGCACAG

Function

symbol description
pou2f2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human POU2F2 (POU class 2 homeobox 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060310-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Is expressed in forebrain; immature eye; and midbrain. Orthologous to human POU2F2 (POU class 2 homeobox 2).

Ensembl:

ensembl_id ENSDARG00000036816

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028717 False 6150 mRNA 0.47 16 6213680 6303099
TCONS_00028718 False 1815 mRNA 0.60 13 6217481 6239248
TCONS_00028719 True 756 processed_transcript 0.57 5 6232164 6238989

Neighbor

gene id symbol gene type direction distance location
XLOC_014508 erf coding downstream 20232 6141913 ~ 6193448 (-)
XLOC_014507 cica coding downstream 78878 6085784 ~ 6134802 (-)
XLOC_014506 gsk3aa coding downstream 129896 6059673 ~ 6083784 (-)
XLOC_014505 NA coding downstream 230358 5968523 ~ 5983322 (-)
XLOC_014504 LO018585.2 coding downstream 347914 5849008 ~ 5865766 (-)
XLOC_014510 atp1a3a coding upstream 25135 6328234 ~ 6385594 (-)
XLOC_014511 NA coding upstream 288937 6592036 ~ 6596617 (-)
XLOC_014512 pvrl2l coding upstream 303098 6606197 ~ 6774871 (-)
XLOC_014513 NA coding upstream 498339 6801438 ~ 6829817 (-)
XLOC_014514 tcf19l coding upstream 531281 6834380 ~ 6840506 (-)
XLOC_014711 CR382300.3 misc upstream 13425591 19728690 ~ 19728755 (-)
XLOC_014503 LO018585.1 non-coding downstream 370475 5843091 ~ 5843205 (-)
XLOC_014501 CU207217.2 non-coding downstream 439645 5773921 ~ 5774035 (-)
XLOC_014499 CU207217.1 non-coding downstream 501661 5709847 ~ 5712019 (-)
XLOC_014496 NA non-coding downstream 612467 5595076 ~ 5601213 (-)
XLOC_014516 NA non-coding upstream 589616 6892715 ~ 6901336 (-)
XLOC_014517 NA non-coding upstream 597857 6900956 ~ 6915573 (-)
XLOC_014531 BX927401.2 non-coding upstream 1165102 7468201 ~ 7468316 (-)

Expression


Co-expression Network