XLOC_014510 (atp1a3a)


Basic Information

Item Value
gene id XLOC_014510
gene name atp1a3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6328234 ~ 6385594 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028720
CAGCCAGAGACGCTTCATAATCCTCTGCGCTGCATATGCTCTTCTATCATTATATCAAAAGCAGCcacatgtgcttttaaaaaccaATGCAGCTTGGCCCATTCTTTACGTTTTTTCTGTATGTAGACCCCCTCTAATACGTTATTACGCATGGTTACTCCAAGTATCTATAGATTTCATTTATAGACAGAGGGTCCTTCAAACGCTGCCCGTCGTTATCCGTGCAAGAGCTTCATTTTTTCTTGTGTCCAGCTTGACTGAAAGCAAACGCCGTTTGACAGACTGAAGAAACAGCGACTGACGGCTCCAAAATGGGGTATGGACGGTCGGACAGCTACCGCGTGGCAACCACGCAGGACAATGATGATAAGGAATCTCCCAAAAAGGGAAAGGGAGGGAAAGACCTTGATGACTTGAAGAAGGAAGTGCCACTGACAGAGCATAAGATGTCGATTGAGGAAGTGTGCCGAAAGTACAACACTGACATCGTACAGGGTCTGACTAATGCCAGGGCTGCAGAGTACCTCGCTCGGGATGGTCCCAATGCTCTCACCCCTCCACCCACCACCCCGGAGTGGGTCAAATTCTGCCGACAGCTCTTCGGAGGTTTCTCCATCCTGCTGTGGATCGGAGCAATCCTCTGCTTCCTGGCCTACGCCATCCAGGCGGCCACTGAGGACGAGCCTGCCGGAGACAACTTGTATCTGGGGATCGTGCTGTCTGCTGTGGTCATCATCACCGGCTGCTTCTCCTACTTCCAGGAGGCCAAGAGCTCCAAAATCATGGAGTCCTTCAAGAACATGGTTCCCCAGCAAGCTTTAGTGATCCGTGAAGGTGAGAAGCTCCAGATTAACGCTGAGGAGGTGGTGGGTGGAGATCTGGTGGAGGTGAAGGGAGGAGACAGGATTCCTGCTGACCTCAGGATCATCTCTGCTCACGGCTGCAagGTGGACAACTCCTCTCTGACGGGTGAATCAGAGCCTCAGACCAGGTCTCCTGACTGCACTCATGATAACCCTCTGGAAACCCGCAACATCGCCTTCTTCTCCACCAACTGTGTTGAAGGTACTGCTCGCGGTATTGTGGTCTGCACCGGTGACCGCACCGTCATGGGCCGCATCGCCACCCTGACCTCCGGCCTGGAGACCGGAAAGACTCCCATCGCCAAAGAGATCGAGCACTTCATCCACATCATCACCGGCGTGGCCGTCTTCCTGGGCGTCACCTTCTTCATCCTGTCCATCATCCTGGGCTACAGCTGGCTGGAGGCCGTCATCTTCCTCATCGGCATCATTGTGGCCAACGTGCCCGAGGGGCTGCTGGCCACCGTCACTGTGTGTCTGACTCTCACAGCCAAGCGAATGGCCCGTAAGAACTGCCTGGTGAAGAATCTGGAGGCTGTGGAGACTCTGGGATCCACTTCCACCATCTGCTCGGATAAAACCGGAACGCTGACGCAGAACCGCATGACTGTCGCTCACATGTGGTTCGACAATCAGATCCATGAGGCAGACACCACTGAAGATCAGTCTGGTGCATCGTTTGATAAGAGCTCTGGCACATGGTTGGCTCTGGCCCGCGTGGCTGCTCTCTGTAACAGGGCCGTGTTTAAAGCGGGACAGGAGTCTCTGCCTATCCTGAAGAGGGATGTCGCAGGGGACGCCTCTGAATCTGCTCTTCTCAAGTGTATCGAGCTGTCCTGCGGCTCCGTCAAAGCCATGAGGGACAAGAACAAGAAAGTGGCCGAAATTCCCTTCAACTCCACCAACAAATATCAGTTGTCAGTGCACGAGTTGGACGAGAGTGAAGAAAACCACTACCTGCTTGTGATGAAGGGGGCACCAGAGCGCATCTTGGACCGCTGCTCCACCATCCTGCAGCAGGGCAAAGAGCAGCCCATGGATGAAGAGTTGAAGGAGGCTTTCCAGAACGCCTACCTGGAGCTCGGAGGACTGGGAGAAAGAGTTCTAGGTTTCTGCCACTTGGTGATGCCTGGTGACAAATACCCCAAAGGCTTCGCGTTTGACACCGACGACATTAACTTCCAGACAGACAACCTGTGCTTTGTGGGTCTGATGTCCATGATTGACCCTCCCCGAGCCGCCGTCCCAGACGCTGTGGGCAAATGCCGCTCAGCTGGTATCAAAGTCATCATGGTGACCGGCGACCATCCCATCACAGCCAAGGCCATCGCCAAAGGTGTGGGCATCATCTCTGAGGGCAACGAGACAGTCGAGGACATCGCCGCTCGCCTGAATATCCCAGTCAGCCAGGTCAACCCAAGGGATGCTAAAGCCTGCGTGATCCACGGCACAGATCTGAAGGATCTCTCGCAGGACCAGATGGATGAAGTGCTGAAGAATCACACAGAGATCGTGTTCGCCAGGACGTCCCCCCAGCAGAAGCTCATCATCGTGGAGGGCTGCCAGAGACAGGGCGCTATCGTGGCCGTGACTGGTGATGGAGTGAATGATTCTCCCGCTCTGAAGAAAGCAGATATCGGCGTGGCCATGGGGATTTCTGGATCAGACGTCTCCAAACAGGCAGCAGACATGATCCTGCTGGATGACAACTTTGCATCCATTGTTACTGGAGTGGAGGAagGTCGCTTGATCTTTGATAACCTGAAGAAGTCCATCGCCTACACGCTGACCAGCAACATCCCTGAGATCACTCCATTCCTGTTCTTCATCCTGGTCAACATTCCTCTTCCTCTGGGCACCATCACCATCCTCTGCATTGACCTGGGCACTGACATGGTCCCTGCGATCTCATTGGCTTATGAAGCAGCAGAGAGTGACATCATGAAGCGTCAGCCCCGTAACCCTCTCCGGGACAAGCTGGTGAACGAGCGTCTCATCAGCATTGCTTACGGACAGATCGGTATGATTCAGGCGCTGGGAGGATTCTTCAGTTATTTCGTGATTCTGGCTGAGAATGGTTTTCTGCCCAGTGTGCTGGTGGGCATTCGGCTGAACTGGGACGATCGCTCCAACAATGACCTGGAGGACAGTTACGGACAGCAATGGACGTACGAGCAGAGGAAGATCGTGGAGTTCACCTGTCACACAGCTTTCTTCGTCAGTATTGTGGTCGTACAGTGGGCCGACGTCATCATCTGCAAGACTCGCCGCAACTCTGTGTTCCAGCAGGGCATGAAGAATAAGATCCTGATCTTCGGGCTGTTTGAGGAGACGGCTCTAGCTGCATTCCTCTCCTACTGTCCCGGGATGGACGTGGCGCTCAGGATGTACCCTCTCAAGCCCAGTTGGTGGTTCTGCGCGTTCCCTTACAGcttcttaatttttgtttatgaTGAGATCCGAAAACTTATCCTGCGCCGAAACCCAGGAGGTTGGGTTGAAAAGGAGACGTACTACTGAATTGTCAAATACTTCACTCATCGATTCTccctcactctctctttctctctctcttctctctttctTATTCACGTTCTCCCCATTCCTACCGAAAACCAATACAGAAACAACCATGTTACAAATCCACCTCCTTCCTTCCCTCCCTTTACCCAATTAAAAAATAACGCAGACCAACAACAACAGACCAACACAACAAACCtcctgttattgttttttttttttttttgtacgtgtgtgtatgtgtgtgtttttctccagCTGAATCTGCCAGAAACACATCGGTAAGGTTTACCGATACTCTCAAAACACACTGTTAGGTTGTGCGAACGCACAGCTTTTGCTAATGGATGTCACGCATCGCGCAGAGACTCCTAAACAAACACTGCCACGCCAGATTACTGTTACACATCGCTCTCCAGACACAAAATACTAATCGTATAGAGGAAACAAACAGtgttgtatttattaatcattcataatgATGTTCTTTTATGTTCGAAGTGTGTCTGAGAGCTGCTTGATTTCGTTTTTTGCTCAGACTTGACAAAAGCACACTGCCAccctctctcgctcgctcgctgtTATAAATGAAGTtgctgccttacatttttaagttccGTCAGTTAGTTTAACTTAACGctacattaaactgacttaaaacagaaAGTTGAAGTCTGCATGAACCGAAAGTTCCAcggacttttatttcagtatgattaTGTGCTTCTTactgaaacggaatattgagtagggggcggagctttAGCTTTGCGCATCATTCCATTGGGCAAACTAACAATAAGAGGCGTGtggtcaaactgacatcatcagagaagaacTGCCATTCATAACACGGAAGCAAATGCTCAGAATtcgattgaagattaccaaaacaaacttcatGTGAATTAACATAAATAGAATAATTTTTCttctaaatgaataaacaataggAGGGGCGTGgccaaactgacatcatcagagaagaacCGCTATTCCAAACACGGAAGCAAATGCTTagaatttgattgaagattactaaaAACAAACTTTCTACTTCAAAAAATGAACATACGCAGATTAATTGCTCtcttaaagaataacaatgtgtgctgGGCGAATAAACAGTCAAATTTGATTTCATGCAcactttaaatcttaaaaaaatcaAGTTGAAGCAAATTTAACTGATTTTATTAAGTTCAAATGAGTATTTCAAAAGTTCTGGAGACTTTTATTATTGTATGTTGATGCAGTtctaactgaaactgaatattgagtaggggcgaaGCTTTCATTTTGCGCATCATTCCTTCGTACATACAAACAATGAGAGGGGCGTGgacaaactgacatcatcagaaaaaaaacgccactccaaacacagaagcaaatgctcagaatttgattgaagattaccaaagcaaactttttatttcaataaatgaaCATACACGGATTAAGTATTGCGATGTGTTGTGGACAAATTAACAGTAAAATTTGATTTCACTCAgactttaaatctttaaaaaattaagttggcGCATATTGAACTCATTTTATTAAGTATTTGTAACATAATGATTGCTAAAGctgatttgattcaacttaaatttTTCAGGCAGCAACTCATTTCTTACAGAGCTCTTCCTTACTCTTTCTCCTTCTATCTTTGTCTTCTATCTCTCGCTCTCCGTCCCCTTTTATCCTGCACTTCCCTCCTCTTtcttctgtccgtccgtctgtccgtccccgtctgtttgtctgtttgtgaACGATGTGAAGACACTCCTCCTCCCTCTTCTATCCGGACCCCGTTTCCCCTGTTACaactacaaaaaaagaaaaaagaaaagaaattacaATCTTTCTGTGTCCTAGGAAAAAGAGATTTCACTCTGATTTCATTGTTTAAATAAGTGCAGAGAAAATCAAAACATGGAGTAAAAGCAATGTACCAATACgtgaaacaaacagcaaaaaaattcaataaaaa

Function

symbol description
atp1a3a Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pancreas primordium; pronephric duct; and trigeminal placode. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3).

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0021591 ventricular system development biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0007626 locomotory behavior biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-7 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Acts upstream of or within locomotory behavior and ventricular system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural tube; pancreas primordium; pronephric duct; and trigeminal placode. Human ortholog(s) of this gene implicated in alternating hemiplegia of childhood; bipolar disorder; dystonia 12; and epilepsy. Orthologous to human ATP1A3 (ATPase Na+/K+ transporting subunit alpha 3).

Ensembl:

ensembl_id ENSDARG00000018259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028720 True 5379 mRNA 0.48 21 6328234 6385594

Neighbor

gene id symbol gene type direction distance location
XLOC_014509 pou2f2a coding downstream 25135 6213680 ~ 6303099 (-)
XLOC_014508 erf coding downstream 134786 6141913 ~ 6193448 (-)
XLOC_014507 cica coding downstream 193432 6085784 ~ 6134802 (-)
XLOC_014506 gsk3aa coding downstream 244450 6059673 ~ 6083784 (-)
XLOC_014505 NA coding downstream 344912 5968523 ~ 5983322 (-)
XLOC_014511 NA coding upstream 206442 6592036 ~ 6596617 (-)
XLOC_014512 pvrl2l coding upstream 220603 6606197 ~ 6774871 (-)
XLOC_014513 NA coding upstream 415844 6801438 ~ 6829817 (-)
XLOC_014514 tcf19l coding upstream 448786 6834380 ~ 6840506 (-)
XLOC_014515 CABZ01029822.1 coding upstream 470995 6856589 ~ 6873107 (-)
XLOC_014711 CR382300.3 misc upstream 13343096 19728690 ~ 19728755 (-)
XLOC_014503 LO018585.1 non-coding downstream 485029 5843091 ~ 5843205 (-)
XLOC_014501 CU207217.2 non-coding downstream 554199 5773921 ~ 5774035 (-)
XLOC_014499 CU207217.1 non-coding downstream 616215 5709847 ~ 5712019 (-)
XLOC_014496 NA non-coding downstream 727021 5595076 ~ 5601213 (-)
XLOC_014516 NA non-coding upstream 507121 6892715 ~ 6901336 (-)
XLOC_014517 NA non-coding upstream 515362 6900956 ~ 6915573 (-)
XLOC_014531 BX927401.2 non-coding upstream 1082607 7468201 ~ 7468316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012093 atp1a2a,LOC107692876,LOC107749099,LOC107721700,LOC102222505,LOC100136182,LOC106569580 coding CM030138.1 CM030138.1 10566210 ~ 10582453 (-)