XLOC_014511


Basic Information

Item Value
gene id XLOC_014511
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6592036 ~ 6596617 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029753
ATCAGATCTGCTGTAATCCCTCTTCTCAGATTTCATATCATAACAAGCAGTTGTTCTGGCACTTGCGCTCTTACCTGTAGCGTCTTAAGCCTGGCGGTGAGAAAACAATGTCTGAAGCTCAGCGTGCGAGATAAGGCGAGAGAAAGACCTCAGTCGACTGACACCTGGACGAGGCTTATCACCCACGGCTTAGCAAGAGAAAATCGAGACGGAGAAAGAGGGCGAAGAGATATCACCCTGCTAACATTAAGTGAAATGTCAGAAAAAGTGGGCTGCCAAGATTACCTGGCTCTTTGCCCACACCGTCCATCATTAGGGCTCATTACGGATGCTTCTAAAACCTTGGAGTTCGCCGTGGAAACACGAGGGCTCACCGGGTCTCCTTTTTTCTTTCGCTTTGATCAATTACAGGATCGAAATGAGGCTTTCGCTTTTGGCTGCCACTCTGACCCGATCGGACtttaatgatttaatgatttattgggCTTCTCTTAAACAGGCAATGAATAAATGATTCGCGCGCAATGTTAAAGTATTCATGAACACGATTAGCCGTTTAGAAACAGTGACATGACATGAGTGAGAGATTCAATCAGGTATtctatttaataatgaaaaatgcacaaaaactgcctgtttctttttaaaaatctgcaagaaatcaacatttaaagtctttattttgctagcgcacattgtaaGATCCCGTGAAACGCTTTCGAATGTGCcgttttattcagtgtttgatTTAATCTCAACTGAACAGTAAGACAGGGTGGGACAAAGAGTAGATTCTCCCCCTAGCCAAAACAGCCAGTAGTGTTATGTTTATATCACAACTCTGCCATTCAGAGCTGTTGAGTTTAAGCATGTCAGACTCATGACTTCTGCAGTCTATAATATTAATTTTGAGGGTGCTGTCACATCTAGacatttgtttcagaacctgtcttaTTTgctcagttagcgcggttcgtttggcatatgtgaatatAGCAATCGCGCTCAGATCCGCACCAAATCAATCGATCAGATATCGCGTCAATGAGGTGGTCTTTGCTCAATTCGAGCAAACTCTGGAGCAGATTAATTGTATTGTGAAAGCAAAACGATCCAACAAACTAACGAACCAGgctatattacagtgtattatgtAAATGCCATATacatggctatatgaagagagaatcaGGAGTAGGGCGGGATGCCATCCTTCCTACcagtaaatgtaaatgtgcaaatacgaaagtgaaagcatgcagaaatattaacgagagctgtttatttGTTATGAAAATTGACTGAAATGACCATCTTATAACTTTTctatattttaatcttataatggGCGAggcaggggcgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctggttcgaacctcggctcagttggcgtttctgtgtggagtttgcatgttctccctaccttcgcgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcggtacaagtgaactgggtaggctaaattgtccgtagtgtatgagtgtgtgtgtgaatgtgtgtgtggatgtttcccagagatgggttgcggctaaaacttgctggataagttggcagttcattctgctgtggcgaccccggattaataaagggactaagccgacaagaaaatgaatggatgaataatctcataatatgttgtattaggcctattgttttgttcatttctgcattgattatcattgatctgcttcatgatctgactgcagtcttggttcatctgttatttctcgctataatttaagcctataatccATATTTCtggccaatgttttttttttttttcgtataaATTGATTGATTCAATAGATAgacttgacaactgaaatgaggccaTGTACGAGAAAGTCTTTCTTCTCAATGtgcagttgaagccagaattattaaccccctctttgaattttctcttctttattaaatatttcctgaataatgtttaacagagcaagaaaattttgatagtatatctgataatattttgtcttctggagaaagtcttatttgttttatttcggctagaataagagcagttataaattaaaaaaaaaaaacctttagggacaaaattactagcccctgtaagctattttttccccaatagtctacagaacaaaccatcattatacaataacttgcctaattaccctaacctgcctagttaacctaatgaacccagttaagcctttaaatgttactttaagctgtatagaagtgtcttgaaaaatatctagtcaactattatttactgtcaacatggcaaagataaaataagttgAAAATACATGAGTTTAACAACAATAAATTGAGTATTGAAGTTTCTGATGCAAGGCTATCCTATAAGCGGATATCTCAGAGCATTTTAAAGATGCATCTCTGCATCGGAATCAATGGAGGCTTACTTAAAAGCAACATTTTACTGAGTGGCTCCAAGattttctctctctcagcaatTTGGTACACACGTCAAAGTTTAACATCTACCATGCAGCATGTACCGATGCTTTAATGTTGAAAAACAGAATACACGCCGTGCCCAGCCAGACGGATCCGGCTGCGCTTTTTTCATAAACATTTAGTTTTCAGCGCGCTCATTACTCCTCTCGATTTTCTTTGTGAAAGTACTCTTCTTTCTGAGTGGATTATGGGTGGAACGGGCTGTCTGAAATGGGACAATAGCACATTTTTCACAAATTTCTCATGGATGTTGACACTGATGTGATGGCGGACGCAATGAACTGTTGAAAAATCATTACAGGATCCTTTTACAGCTTGGCTGTGGTTAGCCTGAGTGATTTCCAGCGCTTCCACGTCCTGTTATCTGTCATTATTCCTCATTACCTGAACCTTCTCTCCTAATAAACCTGCGCTCTGCATGAAGGCCCGTACGATAAATAGATCTCGACGATCTTGCTTTTTGGTAGTATTCAAGAATATGTCTTTATTTAAGAGTGCGTTGATTTCTTTCTCAATCAGAGGAGCTGTCGTTTCAGACTAAGAGCTCATCGCAGGAAATAAAATATGGGAAGACAAGTTAATAATGTGACTCCAGACTGACAATGAAAAATGAAATGGAATCGTTTTATTTCTGAGCTCCAATGTGGCTATGAATAAAGTATTTCTGGCCAATATAAAGCTGTTATGATAGGagaaaacattttattgaaaACATCTAAACAACTTAACTTATAACAATGCTAGAGCAAAATATACCTGCAGACATTCATACTAACgacttaaataaatgaaaaactttgGATTTAAAGACTTCTTAATAACATTTAAActtataaacattattaatgaTAAGTAGATTCATTGAATATAACTAGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029753 True 3403 lncRNA 0.39 2 6592036 6596617

Neighbor

gene id symbol gene type direction distance location
XLOC_014510 atp1a3a coding downstream 206442 6328234 ~ 6385594 (-)
XLOC_014509 pou2f2a coding downstream 288937 6213680 ~ 6303099 (-)
XLOC_014508 erf coding downstream 398588 6141913 ~ 6193448 (-)
XLOC_014507 cica coding downstream 457234 6085784 ~ 6134802 (-)
XLOC_014506 gsk3aa coding downstream 508252 6059673 ~ 6083784 (-)
XLOC_014512 pvrl2l coding upstream 9580 6606197 ~ 6774871 (-)
XLOC_014513 NA coding upstream 204821 6801438 ~ 6829817 (-)
XLOC_014514 tcf19l coding upstream 237763 6834380 ~ 6840506 (-)
XLOC_014515 CABZ01029822.1 coding upstream 259972 6856589 ~ 6873107 (-)
XLOC_014516 NA coding upstream 296098 6892715 ~ 6901336 (-)
XLOC_014711 CR382300.3 misc upstream 13132073 19728690 ~ 19728755 (-)
XLOC_014505 NA non-coding downstream 608714 5968523 ~ 5983322 (-)
XLOC_014503 LO018585.1 non-coding downstream 748831 5843091 ~ 5843205 (-)
XLOC_014501 CU207217.2 non-coding downstream 818001 5773921 ~ 5774035 (-)
XLOC_014499 CU207217.1 non-coding downstream 880017 5709847 ~ 5712019 (-)
XLOC_014496 NA non-coding downstream 990823 5595076 ~ 5601213 (-)
XLOC_014517 NA non-coding upstream 304339 6900956 ~ 6915573 (-)
XLOC_014531 BX927401.2 non-coding upstream 871584 7468201 ~ 7468316 (-)
XLOC_014533 BX927401.1 non-coding upstream 904453 7501070 ~ 7501739 (-)

Expression


Co-expression Network