XLOC_014514 (tcf19l)


Basic Information

Item Value
gene id XLOC_014514
gene name tcf19l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 6834380 ~ 6840506 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028723
ATGTGGGATGTCAAAATGTCGTGTGGAGTTCAGCCGTGTTTTCAGCTGTTGAGGATTGGCTTGTCTAATAGCAATAGCAACAGCAGCAATGGGAATGAATCCGCAGACCCCGTGCGGGACCTGTACACGTTTCGTCCCGCACTGACGCAGTGTGTGTTTCGACTGGGACGAGCCCCAGAGCTGTGTGACGTCACTCTGGAGTCGGTAATCGTGTCCCGGATCCACGCTGAGCTCCATGTGGAGAGAGAAACCGACGCATCTGGAGAAGAAGGATGGAAGGTTCTGGTGAAGGACCGCAGCAGCTATGGCACCTGGGTGAATGACATGCGTCTCCAGCAAGGAGTCCTTAAGGAAATCTTTGACGGCGATACCCTCACCATCGGTGGCCAATCAGGACGGGCCAGTCCAGAATTCTACTTCCTCTTCCAGAAAGTGCGCGTTCGCCCGCTGGACTTTGATGCCATCACCGTACCCAAAGCTGGATCTTTCTCCTCTGACATTAAAAACCGAATCCGAACGTCTTTAGACCGCAAACCAGACCCAAATTTGGACATTTCCAAACTGTCCATCAACAGATCCACGGTGATCCTCAACTCCATCGGCAGCTTGAGCAAGATGAACGGCAGCTGCTGGACATTCAAGAAAAGCGataaaaacactgctttaaatgtgccagcgTTCACAGCATTGGCCCCGCCCACAACCCCGCCCCCTTTTCAAGCCGCTGGCGAGATTTCCTCTAAATCTGTGCCTCCATCCTCAAAGAGCCGACGCAAATCAGCACACACGGTCCTGCTGGAGGACGACAGTTCCGATGATCCTGCAAACCGCATGGAGGACGGAAGAAGAGGACAGGCCAAGAAAAGACGACGGCTTTATAAATCCGAATCAGAGGTGTTTCAGCATCCTCTGCCCAAACTGGAGCCACAGTTTGAAGTGGTCAGTCCCTCCGGCAGTGTCTTCAATGTGGCACCGAACCGGCAGTTCAGCCACATTATGAACATCAGTCACAGTAAAGGTAATGGCATCAGTGTGACTCCGCTCCGCCAGCAGCAGAAGGCCTGTCTGTCTGGACCCGGACGAAGAGCGAGGGCCAACAGCTCCCCCATTTACACTGGCATGGGGATCGGAAGCCAGAATTACAGCCTGACCTCGCCGTCAAATAGGGTGAGCAAGACGGAGAAGGCCAGAGGGGTGATATCACGCTTTCAGGCCTCTACTGGGCGACGGCGTGGACGGCCCAGGAAACACCCTCTCCCGCAGCCCTCCCTGCCGTCTCCCTCATTCTCCTCTTCCAccagctcctcctcttcctccagctcctcctcctcctcttcatcgtctgaggatgatgatgaagtgGTCGTGGCTCAGGGTGTTGAACCGTGCGCAGCGCTGCATTGCCGTCTCCCTCAGCAGGACACTGTGCAGTGGATCCAGTGCGACGACTGCGACGCCTGGTACCACCTGGACTGCCTGCCGCACAAACATAACCGAGACTCGCTGCTGTTCGACCCCAGCGCAGACTTCCACTGCGGCTGCCATCGCTGA

Function

symbol description
tcf19l Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human TCF19 (transcription factor 19).

GO:

id name namespace
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060324-2 Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. Orthologous to human TCF19 (transcription factor 19).

Ensembl:

ensembl_id ENSDARG00000040036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028723 True 1551 mRNA 0.56 3 6834380 6840506

Neighbor

gene id symbol gene type direction distance location
XLOC_014513 NA coding downstream 4563 6801438 ~ 6829817 (-)
XLOC_014512 pvrl2l coding downstream 59509 6606197 ~ 6774871 (-)
XLOC_014511 NA coding downstream 237763 6592036 ~ 6596617 (-)
XLOC_014510 atp1a3a coding downstream 448786 6328234 ~ 6385594 (-)
XLOC_014509 pou2f2a coding downstream 531281 6213680 ~ 6303099 (-)
XLOC_014515 CABZ01029822.1 coding upstream 16083 6856589 ~ 6873107 (-)
XLOC_014516 NA coding upstream 52209 6892715 ~ 6901336 (-)
XLOC_014517 NA coding upstream 60450 6900956 ~ 6915573 (-)
XLOC_014518 znf384l coding upstream 119882 6960388 ~ 6988866 (-)
XLOC_014519 daxx coding upstream 173949 7014455 ~ 7033670 (-)
XLOC_014711 CR382300.3 misc upstream 12888184 19728690 ~ 19728755 (-)
XLOC_014505 NA non-coding downstream 851058 5968523 ~ 5983322 (-)
XLOC_014503 LO018585.1 non-coding downstream 991175 5843091 ~ 5843205 (-)
XLOC_014501 CU207217.2 non-coding downstream 1060345 5773921 ~ 5774035 (-)
XLOC_014531 BX927401.2 non-coding upstream 627695 7468201 ~ 7468316 (-)
XLOC_014533 BX927401.1 non-coding upstream 660564 7501070 ~ 7501739 (-)
XLOC_014534 NA non-coding upstream 672612 7513118 ~ 7513678 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000319_05588528_05591650 TCF19L, TCF19 coding CI01000319 null 5588514 ~ 5593952 (-)