XLOC_014551


Basic Information

Item Value
gene id XLOC_014551
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8649124 ~ 8663238 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030160
ggcacacaaacactgcactctGAGCTCCTGTCGGCAGGTACGCTGCGGTGCGGCTCTTTCTCTAGGAGTAAGTAAAGGAAGCCTCAGCagtcttgaaaaataaataagagtGAAACAAACTTTGTGATGTTCCCTCTGAGACCATCAGATAAAGAGAGCCACATCCTGAGCGCAGCTGCTGTGTGTTTGATACTGGGGCCCCCTACAGGTCACATGTGCACAGTACACTTAAACAGACAGTTCAGCTAAAAATCcacattctgtcatttactctccctctatcatctgttgagcacaaaagaagatattttgaagaatgttggtaaatAGTAGCCACTGAATtccatgtttatatttatatgaagTGGGTTTagctaatatgtacttacactaaaataaataatttgttacaatgaaCTTAATGCGTAAACACATGTCTTTATGATTGATTAAACCTACCAACACTATTAAACCTATTCCTAACCCTACCCGTATCccaagtgttctgcaatacattatgaacacagtaagaacattatatttattttttgatgagaGTACGTAGTAGTTAAAGCCTCCAAATATAGTTCTTCCCTACTATGAGTGTCAATGTTtactgctttccaacattcttcaaaatatcttcttttgtgtttgacagattTAAATGAACTAAATGGCGAGTGAATTCtcgtttttgtgtgaactaaccctttaaatatttttcactcCATCTTAAACTTGAAAatcctcatcatttattcactctcaagTCCCTCTGAAGCAATAAAAACAATAGTAAAGAAAATCTAACAGGAGAAGTTTCTGTCAATCTCTAACCTTCATTGACCTCATTAGTTTctgagttttttggggggtgaGTCCTTATCTTGTTTGGTACTACTTGGTTGTTTTTGCTTGTCTGTTCACATTTGTTTATAAACAAAACTAAGCAgactatgtatgtatatatatgtctgtCTTATATATGTTTCAGTTTCTTCTTATTCCTCTCAAAGGCTTTATGTGGTTATCTAATAATGTTGGTTTAGTTCTAGTTTGAACTCTCGggcataaaaaagtaaaaagttttctcattcttgtttaaaaaaatgtaataaattttctGCGTAATAAAACACATATAGTCTATTCACCCAACTCTAACCGTTTGAAAtgttcttaaataaaaaataagcattttatatGTATATCATATAAACTGAATACAaatctcttaaagggatagttcaaacaaaaaaatgaacatttacccacatttttctcaccctcaagtggttcaaaacatttcctttttctgtcgaacacaaaaaaagatattttgaaaaatgctaaaaaccagtaaccattgacaaccatagtaagaaaaaacaattactatgaaGGACAATGGTTGCAAGTTTTCCaaatttttaaaagctattttgaaaaatgttagaaatctgtaaccatcgaaagaaaaataaatcccatggaagccaatggttacaggttttcaaaatatttataatatattttgaagaatgttagaaatctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030160 True 1558 lncRNA 0.33 2 8649124 8663238

Neighbor

gene id symbol gene type direction distance location
XLOC_014549 trim46b coding downstream 44695 8582685 ~ 8604429 (-)
XLOC_014548 dpm3 coding downstream 112650 8533989 ~ 8536474 (-)
XLOC_014547 NA coding downstream 525682 8121929 ~ 8123442 (-)
XLOC_014546 si:dkey-266f7.9 coding downstream 552140 8086491 ~ 8096984 (-)
XLOC_014545 NA coding downstream 644074 7987661 ~ 8005050 (-)
XLOC_014552 si:ch211-39a7.1 coding upstream 17342 8680580 ~ 8732037 (-)
XLOC_014553 rps27.1 coding upstream 80022 8743260 ~ 8748571 (-)
XLOC_014554 cers2a coding upstream 95098 8758336 ~ 8812963 (-)
XLOC_014555 celf3a coding upstream 153419 8816657 ~ 8880688 (-)
XLOC_014556 BX248499.1 coding upstream 189302 8852540 ~ 8852655 (-)
XLOC_014711 CR382300.3 misc upstream 11065452 19728690 ~ 19728755 (-)
XLOC_014544 NA non-coding downstream 726561 7883547 ~ 7922563 (-)
XLOC_014543 CR628394.1 non-coding downstream 823591 7825395 ~ 7825533 (-)
XLOC_014541 NA non-coding downstream 836559 7801430 ~ 7812565 (-)
XLOC_014560 CU464180.1 non-coding upstream 320117 8983355 ~ 8985638 (-)
XLOC_014561 CR626935.1 non-coding upstream 366781 9030019 ~ 9036367 (-)
XLOC_014562 NA non-coding upstream 513189 9176427 ~ 9186434 (-)
XLOC_014563 CR391915.1 non-coding upstream 569301 9232539 ~ 9234033 (-)

Expression


Co-expression Network