XLOC_014552 (si:ch211-39a7.1)


Basic Information

Item Value
gene id XLOC_014552
gene name si:ch211-39a7.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8680580 ~ 8732037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028780
CTCCTCTCCTTCACTCCACTAGGATATTTTCCTCCTCTATCTCTCTCCATACATCCGAACACATTCCTGTTTCTTTTCTGACCCCGCTTTTTCTTTCCTATCTCCTGGAATGTGGCACTCTTTGGCTTTCACTCTATGTGGGATCTCCGCTTTGATCCAGGTGTCAGTGCAAGGGCCGTACCAGCGGACCCTGTTGAAGAACCTCCTGAAGGATTATAACCGCATGGAGAGGCCTGTAGCCAACGACTCGCAACCCCTCACCGTCTTCCTGTCTATGAGCTTGATACAGATCATGGATGTTGATGAAAAAAATCAAGTACTGACCACCAATATCTGGCTGAACATGCACTGGTATGATCATTATCTGCAGTGGAACCAGTCGGAGTATCCAGGTGTCAAAAACCTTCGCTTCACCACAGACCAAGTGTGGACACCAGATATTCTGCTCTACAACAGTGCAGATGACAAGTTTGACTCCACCTTCAAATCCAATGTTGTGGTGAACTCCAGCGGATACTGCAACTATCTGCCTCCAGGGATCTTCATGAGCACCTGTAACGTGGACGTGCGCTGGTTTCCGTTCGACATCCAGAAGTGCGAGCTCAAATTCGGCTCATGGACGTTTGACGGATGGCTGCTGGACCTCCAGATGAATGAGGCCGATATCTCTGGCTACATGCCCAATGGAGAATGGGACCTTGTGGGTGTGCCGGGCACCAGAAATGAGCTGTTCTACGACTGCTGTAAGGAGCCCTATCCAGACGTGACGTTCGTGGTGACCATCCGCAGGCGAACGCTCTACTACGCCTTGAATCTGCTCATTCCCTGCGTCCTCCTTTCATCCATGACCTTGCTCATCTTCCTCCTGCCTGCAGACTCCGGGGAGAAGATCTCACTAGGCATCACTGTGCTGCTCTCATTAACAGTCTTCATGCTATTGGTGGCAGAGATCATGCCAGCAACCTCAGACTCCATCCCGCTAATAGGGCAGTATTTCGCCAGTATCATGATCATCGTGGGAATGTCGGTTATTGCCACAGTGGTTGTGCTTCAATATCACCATCATGACCCCAACGGAGGGAACATGCCAAAATGGGTTCAGCTAGTCTTGCTCCAGTGGGTGGCCTGGTTTTTGCGTATGAAGCGTCCTGGTGAAAGCGAAGACCCCGAGCGACCTCCTTGTGCCCCCCACTTACGCCGTTGCTCTTCAGGTTCCCAGAGTGGCAGCCTCCCAAACGCACCCGGCTCTGCCTCTGCAGACCTCCACCACCACCACATCTCCTCTACACTCCATCCTCTGCACCCCCAGAGCCTCCTTCAAGCTGCTGCTGCCGCCGGCCACACACACCATCTCCACAACCAGACTAACAGTGCCAACAACAATGGCAACCTGCTCTACATCGGATTCTCCAGTCTGGATGAAGCTTCGCCGCCAGCCTTGCTTGCCGATTCTGTGCAGAGGAACAGCATGTCGGGTGGGCCTCGTCCTACAGTAGTGTCCCCCCCGGTGGTCGGCTCCAGTCCTCCACCTCACCTGCCCTCTCAGTTCTGCAGTCCTCCACCACCCCCTACGCCCAATCTGGAGGCCACGGGTTGTCCGAGTACAGTGTCCGGTGGTGGAGGAGGCTGCTCCTGCTCTGGAACCAGCGGCGGAGGGGATCCCCAACTTCAGGCTATTTTAGAAGAAGTCCGCTATGTCGCTGACAGGTTTCGTGGACAGGATGAGAATGAGAGCGTGACCGAACAGTGGAAGTTTGCTGCAGCTGTTATTGACCGACTTTGTCTGGTGGCTTTCAGCGTTTTCAACATCATCTGCACCATCTCCATTCTGATGTCCGCACCAAACTTTGTGGAGGCAGTTTCCAAGGACTTCATCTGAGCGGTTTGTCGGAGTACGTACGCATTTGGGTTTGACTGTAAATGGGAATTGTTCATCTCCCTAAAACAGTGAGCTTTTTTTCCAAGACTGATTGGAATAATGCAGGATCCTAGGGTCTGGATTGAGAACCCTTCTGTTTGGCTGGACATTTAGGAGGCCGCCGAGACATCTCAAACTGAACTGTGATGCTGAATGGATGCTAAAGACCTTCACCGATAGGTGTTTGTAAATGATGAAGGTGTTGGTTTGCTATTTGGTAAAATGTTCAGCTatggaatgaatgaaaaactaaacttaaaaaa
>TCONS_00028781
ATTCATCTAGCCGGCgcctctgtatgtgtgtgtgcgtaataATAATGAGAGTTTCAGTTATCCGCACAGAGCGTAAAGGTCTTTATGTAATAGTGTTTCCCGGGGCTCCGGCGTTTCTCGGTGTGCATCTTTTTAACTGTCTGGTTTTACTCCAGCGAAAAGGTCAATTGGATTCAATTTGGAGTTGGCTGGTTCAGTGCAGGGCTTGATGAAGAAGAAGTGTGGCATTTCAGAGGCAGTACATCCGTCAGGCAGTTTGAATGCTGACTCTGGGTCAGAATGAAAAGTGCAAATATTTTTTCCTCCAGTTTCGTTTCTTCTTTTCATCCCAGGGATCTTCATGAGCACCTGTAACGTGGACGTGCGCTGGTTTCCGTTCGACATCCAGAAGTGCGAGCTCAAATTCGGCTCATGGACGTTTGACGGATGGCTGCTGGACCTCCAGATGAATGAGGCCGATATCTCTGGCTACATGCCCAATGGAGAATGGGACCTTGTGGGTGTGCCGGGCACCAGAAATGAGCTGTTCTACGACTGCTGTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000037427

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028780 False 2181 mRNA 0.52 10 8680580 8732037
TCONS_00028781 True 542 lncRNA 0.48 2 8699754 8702063

Neighbor

gene id symbol gene type direction distance location
XLOC_014551 NA coding downstream 17342 8649124 ~ 8663238 (-)
XLOC_014550 NA coding downstream 27458 8647533 ~ 8653122 (-)
XLOC_014549 trim46b coding downstream 76151 8582685 ~ 8604429 (-)
XLOC_014548 dpm3 coding downstream 144106 8533989 ~ 8536474 (-)
XLOC_014547 NA coding downstream 557138 8121929 ~ 8123442 (-)
XLOC_014553 rps27.1 coding upstream 11223 8743260 ~ 8748571 (-)
XLOC_014554 cers2a coding upstream 26299 8758336 ~ 8812963 (-)
XLOC_014555 celf3a coding upstream 84620 8816657 ~ 8880688 (-)
XLOC_014556 BX248499.1 coding upstream 120503 8852540 ~ 8852655 (-)
XLOC_014557 rprd2a coding upstream 161915 8893952 ~ 8926575 (-)
XLOC_014711 CR382300.3 misc upstream 10996653 19728690 ~ 19728755 (-)
XLOC_014545 NA non-coding downstream 675530 7987661 ~ 8005050 (-)
XLOC_014544 NA non-coding downstream 758017 7883547 ~ 7922563 (-)
XLOC_014560 CU464180.1 non-coding upstream 251318 8983355 ~ 8985638 (-)
XLOC_014561 CR626935.1 non-coding upstream 297982 9030019 ~ 9036367 (-)
XLOC_014562 NA non-coding upstream 444390 9176427 ~ 9186434 (-)
XLOC_014563 CR391915.1 non-coding upstream 500502 9232539 ~ 9234033 (-)

Expression


Co-expression Network