XLOC_014555 (celf3a)


Basic Information

Item Value
gene id XLOC_014555
gene name celf3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8816657 ~ 8880688 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028788
AAAAGCTACGGGTTATACGGAGTGTCAACACCGTGAATACAGCCGACAGAATTACACAGCATCTTCTTTCCTTTGCCTCTGCATCAAAACAGCTGTCACGGTTCAGACCTTTCCATCGGGACCCGTGTTTAACATCGCAACTCTTCCCCCACCGCTGAGCCGCTCTCCAGTGCTGAAACCCCGGGCGCAGCTGTCGCTCCGTCCCCTTAGGAAACTGTCCTAATGAAGGAGGCCGACGCCATCAAGCTCTTTATTGGCCAGATCCCACGGAATCTGGAGGAGAAGGACCTGAAGCCCATCTTTGAGCAGTTCGGGAAGATCTACGAGCTTACGGTGATCAAGGACAAGTACACGGGAATGCACAAAGGATGTGCCTTCTTGACATACTGTGCGAGGGAGTCAGCCTTGAAGGCCCAGAATGCACTGCACGAGCAGAAGACATTGCCAGGGATGAACCGCCCCATTCAAGTCAAGCCAGCGGACAGTGAAGGCCGAGGagaCAGGAAGCTGTTTGTGGGGATGTTGGGGAAACAGCTGTCAGATGCTGATGTCAGAAAAATGTTCGAGCCGTTCGGGAGTATAGAGGAGTGTACAGTACTCAGAGGACCTGACGGAGCCAGCAAAGGTTGTGCGTTTGTAAAATATCAGAGTAACGCAGAAGCGCAGGCGGCCATCAGCGCTCTCCACGGCAGCCGAACTCTCCCGgGTGCTTCTTCTAGTCTGGTGGTGAAGTTTGCAGACACGGAGAAGGAGCGAGGGATCAGGCGTATGCAGCAGGTGGCCTCTCAGCTGGGCGTCATCAGTCCCATGAGCCTCCACCTGGGCGCCTACAACGCCTACACACAGGCACTTGTCCAGCAGCAGGCGTTGGTGGCTCAGTCTGCATATCTGTCTCCGGTTGCGACGGTTGCGGCAGTACAGATGCAGCAGTTGGCAGCTCTCAACCCCAGCAGCATCATCGCTACACCCATTGCCTCAATCACGCCCTCCTCAGGTACGAGCACTCCTCCAACCATCGCCGCCACACCCGTGCCTGCTCTGCCTCCACCCATCGCAGTCAACAGTTACCCACCGGTCCCTGCAGCGCCCAACGGCCAGTCTGCCTCCGAAGCACTCTACACTAACGGGGTCCACCCATATCAGGCTCAGAGTCCTGCGTTGGATCCTCTCCAGCAGGCGTATACAGGCATGCAGCACTACACGGCTACATACCCCGCTGCTTATGGATTGGTCGGTCAACCGTTCCCACATCAGCCCACCTTGGTTGCCCAGCAACCCCAACAGCCGCAGCAGCTGCAACAACGAGAAGGACCAGAGGGCTGCAATATCTTTATTTATCATCTGCCGCAGGAGTTCACTGACTCGGAGATGCTGCAGATGTTTCTGCCCTTCGGTAACGTCATCTCAGCCAAGGTGTTCGTTGACCGCGCCACCAATCAGAGCAAATGCTTTGGTTTTGTAAGCTTCGACAACCCGGCGAGCGCACAGGCCGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTGCAGCTGAAGAGGCCTAAAGACGCCAACCGTCCATACTGAGACCAACAGGGAAGACAGGAGAGGACTAACGGAGTCAGTTACGAGTCACTTTTCCTCCGCTGCAAATAACGGGACCAACAACTTTTCGCAAAACTACAGTATAAAAAAAACCTACCGAGATTATTTAAAGGaaaaatatacatgtaataacAAAGACAGACTTATTGCACAAGGTGCAGGTTAAATAGAAGGATTTACTACCTTAACAGTATACGATATAGGACCAATCTGCACCGCAGCGCCACTCGCTCTTCTGCTTCACACACTGTCGTGCCGTGTGCTTGTGGGTCGTCATCTTTCTGCCCTCGGCCTGCACATCTacgcactacacacacacacataaatgggACCAACGCAAATGTGTCAGTACTACACGAATTTTGCTTCTGGGTTCAAAAGAACTACTGACTATCAAAGTCTTTCTGCAGCAATCTAAAAATGTGTATATAGAAATTTGAGGGGATCATGTTGTAGACATATCGAAACGGTTCGGGAGGGTGGGACTGGGTCAACGTGATCAGAGCAAAGAAATCATGGTAGATAGAGAAAAGAATATCCTTTGGGGAGTTTTGAAGGAGTTTGCTCTCGGTCTCTAATCTGAGTCCAGTTATACATAGTTCTTCATCTTTAATACTTACGGAAACAAAAAGACCTGTGTGGGGTATAGGATGCCGGTCCTATGTTGCAATCCTCCCTAAAATGACTGAATATAGTTTATCACAGAGAAGCTGTAgttagaggttttttttttgtttgttttgttttttagctttGTTAGTTTTTCgttcatttttttaacaaaacaaaaaaaaaattgtggatgATTCGAGAAGATTCATGAAaggtaaaaacattaaaaatgtatttcattgtAAATATCATGCTTTTAAAATGAAGGTCAAGATTTAAACATTtgggatattattattattattgctattattattattattatttagggaaagtaatttctatctttttttgcaattaatttattaatttcttgaTGGAgggcattttttaaattatttatgaagATAGCGGATCATTGGCACGTCTGATGAATCCAtgtatttttagacattttatttaCAGATTTACCATTAATGaacaatcattattattattattctatttattttcttcAACTGTTGTTTCACAACCtgtcaattacaaaaaaaatttgaataaaattttaaacaata
>TCONS_00028789
GCTGTCGCTCCGTCCCCTTAGGAAACTGTCCTAATGAAGGAGGCCGACGCCATCAAGCTCTTTATTGGCCAGATCCCACGGAATCTGGAGGAGAAGGACCTGAAGCCCATCTTTGAGCAGTTCGGGAAGATCTACGAGCTTACGGTGATCAAGGACAAGTACACGGGAATGCACAAAGGATGTGCCTTCTTGACATACTGTGCGAGGGAGTCAGCCTTGAAGGCCCAGAATGCACTGCACGAGCAGAAGACATTGCCAGGGATGAACCGCCCCATTCAAGTCAAGCCAGCGGACAGTGAAGGCCGAGGagaCAGGAAGCTGTTTGTGGGGATGTTGGGGAAACAGCTGTCAGATGCTGATGTCAGAAAAATGTTCGAGCCGTTCGGGAGTATAGAGGAGTGTACAGTACTCAGAGGACCTGACGGAGCCAGCAAAGGTTGTGCGTTTGTAAAATATCAGAGTAACGCAGAAGCGCAGGCGGCCATCAGCGCTCTCCACGGCAGCCGAACTCTCCCGgGTGCTTCTTCTAGTCTGGTGGTGAAGTTTGCAGACACGGAGAAGGAGCGAGGGATCAGGCGTATGCAGCAGGTGGCCTCTCAGCTGGGCGTCATCAGTCCCATGAGCCTCCACCTGGGCGCCTACAACGCCTACACACAGGCACTTGTCCAGCAGCAGGCGTTGGTGGCTCAGTCTGCATATCTGTCTCCGGTTGCGACGGTTGCGGCAGTACAGATGCAGCAGTTGGCAGCTCTCAACCCCAGCAGCATCATCGCTACACCCATTGCCTCAATCACGCCCTCCTCAGGTACGAGCACTCCTCCAACCATCGCCGCCACACCCGTGCCTGCTCTGCCTCCACCCATCGCAGTCAACAGTTACCCACCGGTCCCTGCAGCGCCCAACGGCCAGTCTGCCTCCGAAGCACTCTACACTAACGGGGTCCACCCATATCAGGCTCAGAGTCCTGCGTTGGATCCTCTCCAGCAGGCGTATACAGGCATGCAGCACTACACGGCTACATACCCCGCTGCTTATGGATTGGTCGGTCAACCGTTCCCACATCAGCCCACCTTGGTTGCCCAGCAACCCCAACAGCCGCAGCAGCTGCAACAACGAGAAGGACCAGAGGGCTGCAATATCTTTATTTATCATCTGCCGCAGGAGTTCACTGACTCGGAGATGCTGCAGATGTTTCTGCCCTTCGGTAACGTCATCTCAGCCAAGGTGTTCGTTGACCGCGCCACCAATCAGAGCAAATGCTTTGGTTTTGTAAGCTTCGACAACCCGGCGAGCGCACAGGCCGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTGCAGCTGAAGAGGCCTAAAGACGCCAACCGTCCATACTGAGACCAACAGGGAAGACAGGAGAGGACTAACGGAGTCAGTTACGAGTCACTTTTCCTCCGCTGCAAATAACGGGACCAACAACTTTTCGCAAAACTACAGTATAAAAAAAACCTACCGAGATTATTTAAAGGaaaaatatacatgtaataacAAAGACAGACTTATTGCACAAGGTGCAGGTTAAATAGAAGGATTTACTACCTTAACAGTATACGATATAGGACCAATCTGCACCGCAGCGCCACTCGCTCTTCTGCTTCACACACTGTCGTGCCGTGTGCTTGTGGGTCGTCATCTTTCTGCCCTCGGCCTGCACATCTacgcactacacacacacacataaatgggACCAACGCAAATGTGTCAGTACTACACGAATTTTGCTTCTGGGTTCAAAAGAACTACTGACTATCAAAGTCTTTCTGCAGCAATCTAAAAATGTGTATATAGAAATTTGAGGGGATCATGTTGTAGACATATCGAAACGGTTCGGGAGGGTGGGACTGGGTCAACGTGATCAGAGCAAAGAAATCATGGTAGATAGAGAAAAGAATATCCTTTGGGGAGTTTTGAAGGAGTTTGCTCTCGGTCTCTAATCTGAGTCCAGTTATACATAGTTCTTCATCTTTAATACTTACGGAAACAAAAAGACCTGTGTGGGGTATAGGATGCCGGTCCTATGTTGCAATCCTCCCTAAAATGACTGAATATAGTTTATCACAGAGAAGCTGTAgttagaggttttttttttgtttgttttgttttttagctttGTTAGTTTTTCgttcatttttttaacaaaacaaaaaaaaaattgtggatgATTCGAGAAGATTCATGAAaggtaaaaacattaaaaatgtatttcattgtAAATATCATGCTTTTAAAATGAAGGTCAAGATTTAAACATTtgggatattattattattattgctattattattattattatttagggaaagtaatttctatctttttttgcaattaatttattaatttcttgaTGGAgggcattttttaaattatttatgaagATAGCGGATCATTGGCACGTCTGATGAATCCAtgtatttttagacattttatttaCAGATTTACCATTAATGaacaatcattattattattattctatttattttcttcAACTGTTGTTTCACAACCtgtcaattacaaaaaaaatttgaataaaatttt
>TCONS_00028790
TCATACTGCGACATAATCCCTTTCAGGATTTAGCAGGATTAATTccttttttgataaaaaaaattcagatcaAATCTATCTATGTATGGAAATATCTCATTTCTCTTCTCTCTTTCTCCAGGACCAGAGGGCTGCAATATCTTTATTTATCATCTGCCGCAGGAGTTCACTGACTCGGAGATGCTGCAGATGTTTCTGCCCTTCGGTAACGTCATCTCAGCCAAGGTGTTCGTTGACCGCGCCACCAATCAGAGCAAATGCTTTGGTTTTGTAAGCTTCGACAACCCGGCGAGCGCACAGGCCGCCATCCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGCTCAAAGTGCAGCTGAAGAGGCCTAAAGACGCCAACCGTCCATACTGAGACCAACAGGGAAGACAGGAGAGGACTAACGGAGTCAGTTACGAGTCACTTTTCCTCCGCTGCAAATAACGGGACCAACAACTTTTCGCAAAACTACAGTATAAAAAAAACCTACCGAGATTATTTAAAGGaaaaatatacatgtaataacAAAGACAGACTTATTGCACAAGGTGCAGGTTAAATAGAAGGATTTACTACCTTAACAGTATACGATATAGGACCAATCTGCACCGCAGCGCCACTCGCTCTTCTGCTTCACACACTGTCGTGCCGTGTGCTTGTGGGTCGTCATCTTTCTG

Function

symbol description
celf3a Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000501-2 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection; positive regulation of mRNA splicing, via spliceosome; and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3).

Ensembl:

ensembl_id ENSDARG00000034668

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028788 False 2786 mRNA 0.47 14 8816657 8880688
TCONS_00028789 False 2589 mRNA 0.46 13 8816665 8877469
TCONS_00028790 True 695 lncRNA 0.45 3 8817560 8824534

Neighbor

gene id symbol gene type direction distance location
XLOC_014554 cers2a coding downstream 3694 8758336 ~ 8812963 (-)
XLOC_014553 rps27.1 coding downstream 68086 8743260 ~ 8748571 (-)
XLOC_014552 si:ch211-39a7.1 coding downstream 84620 8680580 ~ 8732037 (-)
XLOC_014551 NA coding downstream 153419 8649124 ~ 8663238 (-)
XLOC_014550 NA coding downstream 163535 8647533 ~ 8653122 (-)
XLOC_014557 rprd2a coding upstream 13264 8893952 ~ 8926575 (-)
XLOC_014558 ciarta coding upstream 47746 8928434 ~ 8940068 (-)
XLOC_014559 mrps21 coding upstream 77446 8958134 ~ 8962906 (-)
XLOC_014560 CU464180.1 coding upstream 102667 8983355 ~ 8985638 (-)
XLOC_014561 CR626935.1 coding upstream 149331 9030019 ~ 9036367 (-)
XLOC_014711 CR382300.3 misc upstream 10848002 19728690 ~ 19728755 (-)
XLOC_014547 NA non-coding downstream 693215 8121929 ~ 8123442 (-)
XLOC_014545 NA non-coding downstream 811607 7987661 ~ 8005050 (-)
XLOC_014544 NA non-coding downstream 894094 7883547 ~ 7922563 (-)
XLOC_014562 NA non-coding upstream 295739 9176427 ~ 9186434 (-)
XLOC_014563 CR391915.1 non-coding upstream 351851 9232539 ~ 9234033 (-)
XLOC_014564 NA non-coding upstream 500770 9381458 ~ 9382021 (-)

Expression


Co-expression Network