XLOC_014558 (ciarta)


Basic Information

Item Value
gene id XLOC_014558
gene name ciarta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 8928434 ~ 8940068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028793
GTCGTCCCTCGCTGTAAAGTGACGTGAGTGGTGAAAGGAAGAGGAGAGAAGTCCAAAAATTCACTCAGGACAATAGTGCGTGCGATCAAGACAATCCTCGTAAGCAATAAACTTCATATAACCACTTTTAGGCGGACGAGCAACGCTGCAGGACGTGTGAGTGGAACCGGGCACGAGGTTGTTGTGGTACCGACCCAGAAACGACACAGCATCAAGTAATGCTATCACCGGGGAGTCCTTCCAAATGGCAAACACAAGATTCCCTTTCCTCCACCCCGAGTCTCATGTACAGCGAGAGTGAGCAGACGGAGGATGAATCTGAGGTCTTCTCCTCTGAAAGCGAGGCGGCGGGAGTTCCAAAACCACTTTCCTTAGCCAACGGGAGCTCGCCCAATTCAGATTCTCGCCTCAGATTTATGAACCAGAGGAGCAATAATGTTGTAAATGGGCAGACTGGGCCGATCTCAACCCCATCTGAGAGGATTTCTACAGAAGGCGACCTGAGGTTTGCGCGCAAATGCTCAGAGCTGAATGGGTACATCAGGCCTCTAATAGAGCTGCTGAATGGATTGAAAACCGGACGATATGAGAAAGGTTTGAGCTCATTTCAGCAGAGTGTTGCCATGGACCGGCTGCGAAGGATTGTGGGTGTTCTACAAAAACCTGACCTTggGGAGAAGTATATGGGCACTCTTCTGCAGCTGGAGATGATGCTGAAGGTCTGGTTTCCTCAAGTTAGGCCTCAGCATCGTGACAGCACACACTCTTCACTCCACAGTCTCATGGCTAATCTGCCGCCACGCTGGAATCAGGATCAATTACACATTCCTGTCAAGAAGCGCAGATTAAGTTGGTCCGACTCCGACTCGCAAGGATCTTCAAGCAGCAAACGTTTCCTAGAGGACGATCGAGGGTCGAGTCCCAGCGACACCAGCTCATGGCTCAGCAGCTCTGAGCACACATCAAGCGAACTCGACGACGACAGTGcgatctgcacacacacaaaaaacaaaaagacatcAGAATCCAAACTTGTCGAAAACGCCCACCTGCTCATTACGGAAAAGACAATCTCCGTAAAGGAAACCCTTGGGACTGCAATAGGAAGACCACCTCCGCTTGTAATACCGCCGGCGGCCACAGGGGGCAGCGTTTTAGGCACACAGGACTGTTCAGTGTCATCCACAACTCCCACTTCTGACTTAACGGACAGTGGGAATGAATCCGTAAAAGCAGAAGGACCAAAAAAACAGGTTATTCGTAAATCGCATCGCACAGAAACGTTACGCACATAACAGTTTGCCGTcaattttttgtttgtatttttcctCCAGCCTATCGATATTGggaactcaatttttttttttcagaaggctTTTATTCAGTTAGTCTGACTTTACATTCTGCCGCATTTATGTACAACATACATGCTTTCATATAAACAATACAGCATAACAATTTGTCTTATATCTTTACGAAAGTTTTCAAAGGTCAGAAAAGTGTCTTAAAACGCGCAACATAGGGACAGCTATGAAACACTGCTGCACTGCCTTTCAGAATGACACAGGCTTCCAACGATATCTGCCACTTTACAAACACGGGGCGTCAGATATCGACGGTTTAATAAAACATCCAGAAAACACGACTGCGATCGCAATCTACCTTAATGTCCTTCGACTTGAACTGAGAACCACTTTTTAACATCGGATGAAACAGAAGTACATTCTATCGGgcggatattttttatttattgcgtCATTACTTGAAGATACTGAAATCACTTAAGCAGCCTTAAAACGAACGACCTTTCGAAGAGGCCATATAAGGTGGGCCATGGGTTATGATAGCTCAGTGTTGTATATTTATTACGAGGCGAAGAGGATAGTCCCAGGAGCATTGTAAAGTATTCTATAATTACAAGAGCAAATTATCAGTTTATGGAAATAAACGTTTGCCAAAAACATTTGCACATTATTTTCTTACGCTtccatgttgttattattatagctCATTTTGTCACTGAAATCTAATAGATTGCACAGCTAGCTTGTACTCACccgaaaaactttttttttgattcGGAATTTGATGattatgtcaaaataaaagtgaattattAGTATACAGAGTGTCTCACACTGTAAAGATCACACTGAGGAAGACTAGACTTATTAGTAGAATTTATTCTGACATTAGAGATGCAGTATTTGGTAGTAGCTTCATGAGGATTGAGGAATAACCGTGTTGGTATGTTGACTGAGAAAAGCATGTTGTCACTGTCATGTTAAAATACACATCTAAGTATATTGGAGGAATCATAATGGAGATTGTGCTATAAGGGAAAAGCCTGTATGAAGATATGTATTGTGATTTAACATTTAATGACACCAAATGGCTTCATCGGTTGTGGAGGTAGCATTTtgaagatttattattattaatattactctTATTTGTTTCAGAAAAGTCGGCCATTGTAGCACAATTCTTATTCTGTATTCATATTTTCAAGCCCATTTTCTCTTGTACGTCATTTCTTATTTTATAAACGTTTTTTTGTCCAGGTTGCTGAAATGTTTTTCAACATGCTCCACTTTTTGATATCATTAAATGTTGAGAAAATTTCTTATA

Function

symbol description
ciarta Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in circadian regulation of gene expression and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pronephric duct. Orthologous to human CIART (circadian associated repressor of transcription).

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7016 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in circadian regulation of gene expression and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in pronephric duct. Orthologous to human CIART (circadian associated repressor of transcription).

Ensembl:

ensembl_id ENSDARG00000058094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028793 True 2631 mRNA 0.42 6 8928434 8940068

Neighbor

gene id symbol gene type direction distance location
XLOC_014557 rprd2a coding downstream 1859 8893952 ~ 8926575 (-)
XLOC_014555 celf3a coding downstream 47746 8816657 ~ 8880688 (-)
XLOC_014556 BX248499.1 coding downstream 75779 8852540 ~ 8852655 (-)
XLOC_014554 cers2a coding downstream 115471 8758336 ~ 8812963 (-)
XLOC_014553 rps27.1 coding downstream 179863 8743260 ~ 8748571 (-)
XLOC_014559 mrps21 coding upstream 18066 8958134 ~ 8962906 (-)
XLOC_014560 CU464180.1 coding upstream 43287 8983355 ~ 8985638 (-)
XLOC_014561 CR626935.1 coding upstream 89951 9030019 ~ 9036367 (-)
XLOC_014562 NA coding upstream 236359 9176427 ~ 9186434 (-)
XLOC_014563 CR391915.1 coding upstream 292471 9232539 ~ 9234033 (-)
XLOC_014711 CR382300.3 misc upstream 10788622 19728690 ~ 19728755 (-)
XLOC_014551 NA non-coding downstream 265196 8649124 ~ 8663238 (-)
XLOC_014550 NA non-coding downstream 275312 8647533 ~ 8653122 (-)
XLOC_014547 NA non-coding downstream 804992 8121929 ~ 8123442 (-)
XLOC_014545 NA non-coding downstream 923384 7987661 ~ 8005050 (-)
XLOC_014564 NA non-coding upstream 441390 9381458 ~ 9382021 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_04524751_04530395 NA coding CI01000321 null 4524751 ~ 4531478 (+)