XLOC_014587 (ccdc106b)


Basic Information

Item Value
gene id XLOC_014587
gene name ccdc106b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10325360 ~ 10330831 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028836
GGTACGTTTATTAACGCTTATTAATACTTGCAAgcgttatataaaatattagttaaatatATTTCAGAAGTAAAGCCACCTATGAAACAGTCTCCCGTTACTCTGTTTAAAAGGGCTAGGGAGACACGAGcaaattaactaatgtttaatTAACTACCTGTTATTGTTAATGACTAATTAACTACTTAGTTGTGCTTGGTTGTTATTAATTACACACGCCGTGCTCCGTGTCACGCATTTGCACGGTTTATGTGTTTGGTGTTGGTTAGGTCTGAAGCtgttttttcctccttttttgaGCGAGTTCATGTTTGGTTGCAGGTTTGTGAATATCAGGCAGGTCCATGTGACTGATGTCATCATGACGGATGCACAGAGAAGCACAAGGAGCTCCAGAGGTTTGAAGAATGAAAATGGCTATGAAATCTCTATCCCCTTTGAGGACAGCAACCTGGATGATTCGGGTTTCTATAGTCCAAATGACCACCCGTTTGATGAGTCCGCATCGGGTTCCATTCCTCCTTGCAGTCCATACCTTCTGATCACCAGCCTCCGAGCTCAACTGCAGATCTCTCTGGAGAAGAACTCCTGGCTTCAGAAACGCATTGAAGATCTGGAGGAGGAGAGGGACTTCCTGCGCTGCCAACTTGACCGATTTATTTTCAACACCAAGAGTCGGGAGTGCAATGGCACTTTGGAAAAAGgAACTGAAGCAGAGCACATGCAGCAAGCCACTGGCCAGAAGCAGCCTATCAAGCTTTCCACAAGGAAAACATCCACTCCATCACCCATGATGACACGCTCTGGAAAAATCCCTGTTCGCAGCCAGAAGCGAAGCAGAAAGAACAgtcaggaagaagaagaagaggaggaggtgaTTGAAGAGGAAGAGTATATAGCGGAGGAAGATTATGTGGAAGAGGAACAGCTCATTACAGATGACGATGGTAACATTTCAGAGGATAAAACCTCACGTAAAAGTTGTACAGGCAGGCTGAGTGGCCAAATGAGGGTGAAACGACGACGCGTCTTCCGTTTCGCACGAAGCATGGAAAGACAAAGGGTGAAAGACCCTGCTGGTGTTCTGCTCCGCTACAATAAGATCCTCGTGACCTATCAGAAGCTGAAGAGCATGTCTAGAGCCTTTCAGGTCCACGGGGTTGACAGAAACACCGTCGCCTCCACTACTCCCATTGCTGAAATGCTCTTAGTTGCTCCTGAGAAGTTGTCTGAGGTTGGAGAGTTTGATTCCTCCAAGGAGAAGCTTCTGGATTATGCCAGACGCTGCTATAAAGCTCTTGATGAGGAAGCTCACGCAAAGGTGCAGACCTTGAAGAAAACCAACCTCTTGCTGCCCATTTCCTACAGGTTCAGGCACTGAATTTCCAAAAATGTGTGTCAGTGGTGTTGAAGTTTAAACACTGAACTTTCATGGGCTCCTTTTTTCTACCTCAGTTATAGATTGACACATAAGGAGTGAAGTCCCAACTATGTGCCAGTTATTTATGCTAATTAGACTCCAAAGTTAAAAAGAAATGTAAGATAGTTAGTCAGCCACTGTATATGAGGGGTTACCTTTTCTTGTTTTGTGTATATGCTTGAGTTTCTTGTTGTAAACTTTGGACAACTCACTTTTTGTCCGGGTATCATGTAAGGTAACACTTCGGTTTTGTATACTGATCACACTTCATGCTAAAGgatgttgatttaaaataaagttcATCACTTGCAATCATGCAAAAGAAAGTATAAA
>TCONS_00028837
CGGACGATTCAATCCCATTTGCTGTTTACCAAACGCTGTTGAATTTGGAAGTTTGTGAATATCAGGCAGGTCCATGTGACTGATGTCATCATGACGGATGCACAGAGAAGCACAAGGAGCTCCAGAGGTTTGAAGAATGAAAATGGCTATGAAATCTCTATCCCCTTTGAGGACAGCAACCTGGATGATTCGGGTTTCTATAGTCCAAATGACCACCCGTTTGATGAGTCCGCATCGGGTTCCATTCCTCCTTGCAGTCCATACCTTCTGATCACCAGCCTCCGAGCTCAACTGCAGATCTCTCTGGAGAAGAACTCCTGGCTTCAGAAACGCATTGAAGATCTGGAGGAGGAGAGGGACTTCCTGCGCTGCCAACTTGACCGATTTATTTTCAACACCAAGAGTCGGGAGTGCAATGGCACTTTGGAAAAAGgAACTGAAGCAGAGCACATGCAGCAAGCCACTGGCCAGAAGCAGCCTATCAAGCTTTCCACAAGGAAAACATCCACTCCATCACCCATGATGACACGCTCTGGAAAAATCCCTGTTCGCAGCCAGAAGCGAAGCAGAAAGAACAgtcaggaagaagaagaagaggaggaggtgaTTGAAGAGGAAGAGTATATAGCGGAGGAAGATTATGTGGAAGAGGAACAGCTCATTACAGATGACGATGGTAACATTTCAGAGGATAAAACCTCACGTAAAAGTTGTACAGGCAGGCTGAGTGGCCAAATGAGGGTGAAACGACGACGCGTCTTCCGTTTCGCACGAAGCATGGAAAGACAAAGGGTGAAAGACCCTGCTGGTGTTCTGCTCCGCTACAATAAGATCCTCGTGACCTATCAGAAGCTGAAGAGCATGTCTAGAGCCTTTCAGGTCCACGGGGTTGACAGAAACACCGTCGCCTCCACTACTCCCATTGCTGAAATGCTCTTAGTTGCTCCTGAGAAGTTGTCTGAGGTTGGAGAGTTTGATTCCTCCAAGGAGAAGCTTCTGGATTATGCCAGACGCTGCTATAAAGCTCTTGATGAGGAAGCTCACGCAAAGGTGCAGACCTTGAAGAAAACCAACCTCTTGCTGCCCATTTCCTACAGGTTCAGGCACTGAATTTCCAAAAATGTGTGTCAGTGGTGTTGAAGTTTAAACACTGAACTTTCATGGGCTCCTTTTTTCTACCTCAGTTATAGATTGACACATAAGGAGTGAAGTCCCAACTATGTGCCAGTTATTTATGCTAATTAGACTCCAAAGTTAAAAAGAAATGTAAGATAGTTAGTCAGCCACTGTATATGAGGGGTTACCTTTTCTTGTTTTGTGTATATGCTTGAGTTTCTTGTTGTAAACTTTGGACAACTCACTTTTTGTCCGGGTATCATGTAAGGTAACACTTCGGTTTTGTATACTGATCACACTTCATGCTAAAGgatgttgatttaaaataaagttcATCACTTGCAATCATGCAAAAGAAA
>TCONS_00028838
GATTCAATCCCATTTGCTGTTTACCAAACGCTGTTGAATTTGGAAGTAGGTTTGTGAATATCAGGCAGGTCCATGTGACTGATGTCATCATGACGGATGCACAGAGAAGCACAAGGAGCTCCAGAGGTTTGAAGAATGAAAATGGCTATGAAATCTCTATCCCCTTTGAGGACAGCAACCTGGATGATTCGGGTTTCTATAGTCCAAATGACCACCCGTTTGATGAGTCCGCATCGGGTTCCATTCCTCCTTGCAGTCCATACCTTCTGATCACCAGCCTCCGAGCTCAACTGCAGATCTCTCTGGAGAAGAACTCCTGGCTTCAGAAACGCATTGAAGATCTGGAGGAGGAGAGGGACTTCCTGCGCTGCCAACTTGACCGATTTATTTTCAACACCAAGAGTCGGGAGTGCAATGGCACTTTGGAAAAAGgAACTGAAGCAGAGCACATGCAGCAAGCCACTGGCCAGAAGCAGCCTATCAAGCTTTCCACAAGGAAAACATCCACTCCATCACCCATGATGACACGCTCTGGAAAAATCCCTGTTCGCAGCCAGAAGCGAAGCAGAAAGAACAgtcaggaagaagaagaagaggaggaggtgaTTGAAGAGGAAGAGTATATAGCGGAGGAAGATTATGTGGAAGAGGAACAGCTCATTACAGATGACGATGGTAACATTTCAGAGGATAAAACCTCACGTAAAAGTTGTACAGGCAGGCTGAGTGGCCAAATGAGGGTGAAACGACGACGCGTCTTCCGTTTCGCACGAAGCATGGAAAGAC

Function

symbol description
ccdc106b Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005654 nucleoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-6 Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106).

Ensembl:

ensembl_id ENSDARG00000058578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028836 False 1753 mRNA 0.43 6 10325360 10330778
TCONS_00028837 False 1475 mRNA 0.45 7 10325367 10330831
TCONS_00028838 True 786 mRNA 0.48 6 10326142 10330826

Neighbor

gene id symbol gene type direction distance location
XLOC_014586 u2af2b coding downstream 787 10299002 ~ 10324573 (-)
XLOC_014585 cnot3b coding downstream 30187 10252052 ~ 10295173 (-)
XLOC_014584 shisa7b coding downstream 82212 10217598 ~ 10243148 (-)
XLOC_014583 znf865 coding downstream 111095 10201170 ~ 10214265 (-)
XLOC_014582 dbpa coding downstream 128990 10177115 ~ 10196370 (-)
XLOC_014588 si:ch211-232m10.6 coding upstream 25514 10356345 ~ 10373630 (-)
XLOC_014589 zgc:194578 coding upstream 44951 10375782 ~ 10395683 (-)
XLOC_014590 si:ch211-171h4.3 coding upstream 84653 10415484 ~ 10425140 (-)
XLOC_014591 il11b coding upstream 98979 10429810 ~ 10432134 (-)
XLOC_014592 si:ch211-171h4.5 coding upstream 123474 10454305 ~ 10478229 (-)
XLOC_014711 CR382300.3 misc upstream 9397859 19728690 ~ 19728755 (-)
XLOC_014581 BX950852.2 non-coding downstream 202013 10123233 ~ 10123347 (-)
XLOC_014580 BX950852.1 non-coding downstream 312746 10012498 ~ 10012614 (-)
XLOC_014578 NA non-coding downstream 418421 9904324 ~ 9906939 (-)
XLOC_014572 BX927218.2 non-coding downstream 641852 9676517 ~ 9683508 (-)
XLOC_014570 NA non-coding downstream 715848 9594867 ~ 9609512 (-)
XLOC_014600 BX005424.1 non-coding upstream 374628 10705459 ~ 10705475 (-)
XLOC_014603 NA non-coding upstream 528291 10859122 ~ 10881508 (-)
XLOC_014611 FP074861.1 non-coding upstream 862418 11193249 ~ 11193363 (-)
XLOC_014612 NA non-coding upstream 888930 11219761 ~ 11227568 (-)
XLOC_014620 CR548625.1 non-coding upstream 1394665 11725496 ~ 11725631 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_03739229_03740955 NA coding CI01000321 null 3739229 ~ 3740990 (+)