XLOC_014597 (tekt2)


Basic Information

Item Value
gene id XLOC_014597
gene name tekt2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10636369 ~ 10648523 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028853
ATACTGTGTCAGCAAACATGGCCACCTTAAGCTCGAAGCCAGCCTCACGCTACAGTGTTTCTGACTGGGCAACTAACAATAAGCAAATGTCAGATACTGCTGAACACAAACGCAATGTTTCACACGAGATACGACAGGAAGGAAGAGCTCTGCGTAACGAAACGACCAATAAGACAAGCTGGAATGAGTATGACAGCACCCGGAAACTTAGAGACAGAATTAATGACATCACACGCTGGAAGGAGAATCTGAAAGCCTGTGCGCAGGAAGTGGATGAAGAAATGGACGCTCTCACTCTGTCCAAGGAGGAGATGGAACGAGCCCTTGCAGCCACAGTTCTGCCTCTTGAAGTGACCGCCGAGTGCTTGAACCTGAGGGAAGGCCGTCGTGGGAAGGAGCTGGTCAGTGACCCAGTAGAAGCTGAACTTAAGAAAGAAGTTGAGGTGATTGATGGAGCACAACGTGTCCTTCAACAGTGCATCGATCAGGCCTTTGAACAGCTGTGATCTTCTCAGTCGTCTACAGGAAGCTCGGCAACAGCTGACCATTGACCTTCAGGATAAAATAGAGGCCCTCGATGTGGATATGTCATGCTTATCTCTTACTATACAATCACCTGAGATCTCACTGAAGCCTAACCCTACAAGAGTGCCCCCTGGTTCCACCAATCCCCAGCAGTGGGAGCAGTTCAGCCGGTACAATATTAGCCGGGCAAGGGAAGAGATGCAGGTCTCAGTGCAGATAAGAGAAAATAACAGCATCACAAGAGCACAGGTGCAGAATGAACTGGAAGCCCAACGAATGTCGGTGGAGTTTGCGCTCCGTAAGCGAACTCACCACGAGGAACAAGCCCATCATGATATGCAATGGCAGCTGAAAACGACTCAAGATGAGATTGCTGAGCTGGAGAAGGATATCATTGGCCTGGAGGAGGACCTGCAGGCTAAGACAGCGCCTCTAAAGCTGGTCCACACCCGTCTGGAGAACAGGATAAAGAGACCTGGCATGGACTTGTGCCGAGATGAGGTACAGTTTGGATTGGTGGATGAAGCCAAGCACCTGGAAGCCACTATTCTGGCACTGAAACAGAAGCTAGCACAGGCCCAGCACTCTCTGCAGTCTCTGAAGCAGCATGAAGCTCAGATGATGGAAGAACTGTCTCGTAAACAGGATGCCTTGTCGCTGGAGCAGCGCAGCAACCAGACCCGGCAGCGCTTGACTCTGGGGGGCACGACTGAGGGTCTGCCTTCAGCTGTTGTGCCCCTTGCCAACTCTAGTGGCAGACACAAGCTGGTCCTTGCTTGAGTTGATTCCCTGATTCTTACTTCTGAGGTTATATTTACAAGGGGTGTGACGAGACGCTTACTCCACAAGACGAGACGAGACACGAGATTGGGTTCACGAGAACTAGACGAgattttttatacaatttttttgCAATCCTccatgaaatatattttatttaactgaaaaaaaaaatcacaaaatgctAAACTATTTAGGTGTTTTTTAAAATCAACTTGTAATGATTTTACTTCAATTTTATTAAATTCTATGCTGTAAAGggcatgcaaacactgcaaactATTTTGCTTAcatatgaatggaaaatagtaTTTATATGTAACAAAATA
>TCONS_00028854
CAAAAGACAACACTAAAAGATCAGTCTTCCCGATACTGTGTCAGCAAACATGGCCACCTTAAGCTCGAAGCCAGCCTCACGCTACAGTGTTTCTGACTGGGCAACTAACAATAAGCAAATGTCAGATACTGCTGAACACAAACGCAATGTTTCACACGAGATACGACAGGAAGGAAGAGCTCTGCGTAACGAAACGACCAATAAGACAAGCTGGAATGAGTATGACAGCACCCGGAAACTTAGAGACAGAATTAATGACATCACACGCTGGAAGGAGAATCTGAAAGCCTGTGCGCAGGAAGTGGATGAAGAAATGGACGCTCTCACTCTGTCCAAGGAGGAGATGGAACGAGCCCTTGCAGCCACAGTTCTGCCTCTTGAAGTGACCGCCGAGTGCTTGAACCTGAGGGAAGGCCGTCGTGGGAAGGAGCTGGTCAGTGACCCAGTAGAAGCTGAACTTAAGAAAGAAGTTGAGGTGATTGATGGAGCACAACGTGTCCTTCAACAGTGCATCGATCAGGCCTTTGAACAGCTGTGTCGTCTACAGGAAGCTCGGCAACAGCTGACCATTGACCTTCAGGATAAAATAGAGGCCCTCGATGTGGATATGTCATGCTTATCTCTTACTATACAATCACCTGAGATCTCACTGAAGCCTAACCCTACAAGAGTGCCCCCTGGTTCCACCAATCCCCAGCAGTGGGAGCAGTTCAGCCGGTACAATATTAGCCGGGCAAGGGAAGAGATGCAGGTCTCAGTGCAGATAAGAGAAAATAACAGCATCACAAGAGCACAGGTGCAGAATGAACTGGAAGCCCAACGAATGTCGGTGGAGTTTGCGCTCCGTAAGCGAACTCACCACGAGGAACAAGCCCATCATGATATGCAATGGCAGCTGAAAACGACTCAAGATGAGATTGCTGAGCTGGAGAAGGATATCATTGGCCTGGAGGAGGACCTGCAGGCTAAGACAGCGCCTCTAAAGCTGGTCCACACCCGTCTGGAGAACAGGATAAAGAGACCTGGCATGGACTTGTGCCGAGATGAGGTACAGTTTGGATTGGTGGATGAAGCCAAGCACCTGGAAGCCACTATTCTGGCACTGAAACAGAAGCTAGCACAGGCCCAGCACTCTCTGCAGTCTCTGAAGCAGCATGAAGCTCAGATGATGGAAGAACTGTCTCGTAAACAGGATGCCTTGTCGCTGGAGCAGCGCAGCAACCAGACCCGGCAGCGCTTGACTCTGGGGGGCACGACTGAGGGTCTGCCTTCAGCTGTTGTGCCCCTTGCCAACTCTAGTGGCAGACACAAGCTGGTCCTTGCTTGAGTTGATTCCCTGATTCTTACTTCTGAGGTTATATTTACAAGGGGTGTGACGAGACGCTTACTCCACAAGACGAGACGAGACACGAGATTGGGTTCACGAGAACTAGACGAgattttttatacaatttttttgCAATCCTccatgaaatatattttatttaactgaaaaaaaaaa
>TCONS_00028855
AACATGGCCACCTTAAGCTCGAAGCCAGCCTCACGCTACAGTGTTTCTGACTGGGCAACTAACAATAAGCAAATGTCAGATACTGCTGAACACAAACGCAATGTTTCACACGAGATACGACAGGAAGGAAGAGCTCTGCGTAACGAAACGACCAATAAGACAAGCTGGAATGAGTATGACAGCACCCGGAAACTTAGAGACAGAATTAATGACATCACACGCTGGAAGGAGAATCTGAAAGCCTGTGCGCAGGAAGTGGATGAAGAAATGGACGCTCTCACTCTGTCCAAGGAGGAGATGGAACGAGCCCTTGCAGCCACAGTTCTGCCTCTTGAAGTGACCGCCGAGTGCTTGAACCTGAGGGAAGGCCGTCGTGGGAAGGAGCTGGTCAGTGACCCAGTAGAAGCTGAACTTAAGAAAGAAGTTGAGGTGATTGATGGAGCACAACGTGTCCTTCAACAGTGCATCGATCAGGCCTTTGAACAGCTGTGTCGTCTACAGGAAGCTCGGCAACAGCTGACCATTGACCTTCAGGATAAAATAGAGGCCCTCGATGTGGATATGTCATGCTTATCTCTTACTATACAATCACCTGAGATCTCACTGAAGCCTAACCCTACAAGAGTGCCCCCTGGTTCCACCAATCCCCAGCAGTGGGAGCAGTTCAGCCGGTACAATATTAGCCGGGCAAGGGAAGAGATGCAGGTCTCAGTGCAGATAAGAGAAAATAACAGCATCACAAGAGCACAGGTGCAGAATGAACTGGAAGCCCAACGAATGTCGGTGGAGTTTGCGCTCCGTAAGCGAACTCACCACGAGGAACAAGCCCATCATGATATGCAATGGCAGCTGAAAACGACTCAAGATGAGATTGCTGAGCTGGAGAAGGATATCATTGGCCTGGAGGAGGACCTGCAGGCTAAGACAGCGCCTCTAAAGCTGGTCCACACCCGTCTGGAGAACAGGATAAAGAGACCTGGCATGGACTTGTGCCGAGATGAGGTACAGTTTGGATTGGTGGATGAAGCCAAGCACCTGGAAGCCACTATTCTGGCACTGAAACAGAAGCTAGCACAGGCCCAGCACTCTCTGCAGTCTCTGAAGCAGCATGAAGCTCAGATGATGGAAGAACTGTCTCGTAAACAGGATGCCTTGTCGCTGGAGCAGCGCAGCAACCAGACCCGGCAGCGCTTGACTCTGGGGGGCACGACTGAGGGTCTGCCTTCAGCTGTTGTGCCCCTTGCCAACTCTAGTGGCAGACACAAGCTGGTCCTTGCTTGAGTTGATTCC

Function

symbol description
tekt2 Predicted to be involved in cilium assembly and cilium movement involved in cell motility. Predicted to be located in motile cilium. Predicted to be active in microtubule cytoskeleton. Is expressed in Kupffer's vesicle; otic vesicle; pronephric duct; sensory system; and spinal cord. Orthologous to human TEKT2 (tektin 2).

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060294 cilium movement involved in cell motility biological_process
GO:0031514 motile cilium cellular_component
GO:0042995 cell projection cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005929 cilium cellular_component

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040113-1 Predicted to be involved in cilium assembly and cilium movement involved in cell motility. Predicted to be located in motile cilium. Predicted to be active in microtubule cytoskeleton. Is expressed in Kupffer's vesicle; otic vesicle; pronephric duct; sensory system; and spinal cord. Orthologous to human TEKT2 (tektin 2).

Ensembl:

ensembl_id ENSDARG00000028973

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028853 False 1634 nonsense_mediated_decay 0.47 9 10636369 10646822
TCONS_00028854 False 1501 mRNA 0.49 10 10636524 10648523
TCONS_00028855 True 1290 mRNA 0.51 9 10636689 10646808

Neighbor

gene id symbol gene type direction distance location
XLOC_014596 si:dkey-211g8.9 coding downstream 4887 10630679 ~ 10631482 (-)
XLOC_014595 si:dkey-211g8.7 coding downstream 8617 10624644 ~ 10627752 (-)
XLOC_014594 si:dkey-211g8.6 coding downstream 23595 10611788 ~ 10612774 (-)
XLOC_014593 lim2.4 coding downstream 82017 10537443 ~ 10554352 (-)
XLOC_014592 si:ch211-171h4.5 coding downstream 158140 10454305 ~ 10478229 (-)
XLOC_014598 olah coding upstream 901 10649424 ~ 10656796 (-)
XLOC_014599 slc9a3.1 coding upstream 43643 10692166 ~ 10730488 (-)
XLOC_014600 BX005424.1 coding upstream 56936 10705459 ~ 10705475 (-)
XLOC_014601 slc9a3.2 coding upstream 89627 10738150 ~ 10771558 (-)
XLOC_014602 si:dkey-3n22.9 coding upstream 157335 10805858 ~ 10810006 (-)
XLOC_014711 CR382300.3 misc upstream 9080167 19728690 ~ 19728755 (-)
XLOC_014581 BX950852.2 non-coding downstream 513022 10123233 ~ 10123347 (-)
XLOC_014580 BX950852.1 non-coding downstream 623755 10012498 ~ 10012614 (-)
XLOC_014578 NA non-coding downstream 729430 9904324 ~ 9906939 (-)
XLOC_014572 BX927218.2 non-coding downstream 952861 9676517 ~ 9683508 (-)
XLOC_014570 NA non-coding downstream 1026857 9594867 ~ 9609512 (-)
XLOC_014603 NA non-coding upstream 210599 10859122 ~ 10881508 (-)
XLOC_014611 FP074861.1 non-coding upstream 544726 11193249 ~ 11193363 (-)
XLOC_014612 NA non-coding upstream 571238 11219761 ~ 11227568 (-)
XLOC_014620 CR548625.1 non-coding upstream 1076973 11725496 ~ 11725631 (-)

Expression


Co-expression Network