XLOC_014599 (slc9a3.1)


Basic Information

Item Value
gene id XLOC_014599
gene name slc9a3.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10692166 ~ 10730488 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028860
TGATGGACAGACCGCCAAGTGACTTAACCTTTAGAGATTTAAAGAAAAACTAGCTTTGAGGGAAACTGAAGTACTTTGTCTCTCCGAGGACTTTGCCCTTCAGGAAAAGCAAGCAGAAAGAGCACACTGGGATCCCAAATTGTGAGATTTTTCTGAAGGACTGCTATAGCACACAAAGTTTGGAGATGAGAAGGATACTGTAAGTGCATCGTTATCAGTCGTAATGGCGAGCTCTACTTACATCTGCCTGCTGAGGGCAGCTTTCCTGGTTTGTTTGGTTTACCCTTTAGTCAAAGGAAATTCAGTTGAGGTGTCGGATCCTCATCATCACCAGACAGAGAATCTCACAGGACTTCCAATAGTCACATTTAAGTGGCATCACGTTGAGACCCCGTACTTGGTGGCCCTTTGGGTGTTTGTGGCTGGATTGGCTAAACTATCAGTGATTCAGCTGAACCACAGCATCACCGGTGTGTTTCCGGAAAGCGGTCTTCTCATTATTCTGGGCTTTATTTTGGGAGGAATCGTTGTGGGCGCAGACAAAGCGCAGACTTTCAAACTGCTTCCTTCCACTTTCTTCTATTACCTGCTGCCTCAGATCATCCTGGACGCCAGCTATTTTATGCCCAACAAGCTCTTCTTCAGAAACTTGGGTGCTATTCTTATTTATGCCATCTTTGGGACGTGCTGGAACGCAGCTGCTGTAGGACTCTCTCTGTGGGGCTGCCATGAAGCGGGAGCAATGGGTGACTTGAACATCGGCCTCCTGCAGTTCCTGTTGTTTGGCAGTTTAATCGCTGCTGTGGACCCTGTGGCTGTGATCGCCGTCTTTGAAGAAGTGCATGTGAACGAGGTGCTCTTTATCCTGGTGTTTGGAGAGTCACTGCTCAATGATGGCGTCACAGTGgtGCTTTACAATGTGTTTGATGGTTTCGTTTCTCTTGGAGGCCCAATGATTGACGCCGCAGAGATTTTTAAGGGCATATGTTCGTTTGTCGTGGTGGCATTCGGAGGCTCGTTTGTTGGTGTTGCATTTGCCATCCTGCTGTCCCTGCTGACCAGATGCACCAAACACGTTCAGATCATCGAAGCCGGCTTCGTGTTTTTGGTGGGATACCTGTCCTACCTGACAGCAGAGATGCTCTCACTCTCTGCTATACTTTCaaTCACTTTCTGCGGTGTGTGCTGTCAGAAATACATCAACGCCAACATGGATGAGAGATCAGTCACAACAGTTCGTCACGCCATGAAGATGCTTGCGAATGGCTCAGAAACCATGATCTTCCTGTTTTTGGGCGTTACAGCCATTGACACGGAGATCTGGGTCTGGAATACTGGTTTCATCCTCCTCACCCTCCTCTTCATCTTCATCTACAGGATCATAGGTGTTTTCATGTTCACCTGGATGTTAAATAAGTTCCGATTGGTCCCCGTGGAGCTGATTGACCAGGTGGTGATGAGCTACGGTGGCCTGCGGGGGGCAGTGGCGTACGGTCTGGCAGCAATGCTGGACGAAAGCAGGATCCCGGAGAAAAAGTTGATGATCAGCACCACACTCATTGTGGTGTATTTCACTGTCATCCTTCAGggaATCACAATGAAGCCGTTGGTACAGTGGCTCAAGGTCAAAAGAGCAGCTCATTCTGACTTGAAACTTGTTGAGAAACTGAACAACAGGGCATTTGATCACATACTAGCCGCAGTGGAGGACATTTGCGGACGTATAGGAGATAACTGGTGGACCAGAGGCTGGAACAGGTTTGAGGAGAAGTATATTAGCTGGCTATTGATGAAACCAAAGGCCAGAAAGAACAGAGATTACCTGTTCAACATCTTCCACAAACTCAATCTGGAGGACGCCATGAACTACGTCAGTGAGGGTGAACGGCAAGGCTCTCTGGCCTTTATTCGTAATGACGAAGCTGCCAACGTTGATTTCAAAAAACAGTTCGACTCAGAATTTGCAGATGTGATGCCCGATATAATGGTTGATATGTCAAACTACGATTTTGGAATTGAAAATATTTCAGTAGCCACcattgtGAAAGACACTATTCCCTCTGTATCTCTGGACATTCATGGGCAAGACGGGAAGAATGTGGTCGACGACATCAATGCCCATCGCCTTCTACAGCAGCACCTGTACAGGAGCAGAAAACATCACCATCACAAATACAGTCGCAGTCACTTCAGCATCAACCAGAGTGAAGAGGAGGTGCAGGAGATTTTTCAGAGGACCATGAGGAGCCGCCTGGAGTCCTTCAAATCTGCTAAGATGGGTGTCAACCCTACCAAAAAGATCACTAAGTTCCATAAGAAGGATCCTACAGATAAGATGAATGGACACACAGAGGGCAATGGCTATCTGTATGGAGATGAAGCTGACAGTGGGGTTGGTGCTGATGGTGCTATATCTAGCACTTTCATGAGAGACACGTATAAAATGGGAGCAGGCATAGAGAATCCAGTATTTATGCCAGACATGGACAGCCCAGTTCACAGTCCAGTTCATAGTCCACCATGGCTGCTGGAGACTGAGATGAGCGTCGCTCCTTCCCAGAGGGCTCAGCGGCGTCTGCCCTGGACACCAAACCGCCGTCTCGCACCCATGAGGATCAGCACCTGCTCCACAGACTCCTTCCTGATGGCGGACGTCTCTTCAACACTGGAGGTGCACGAGGAACAGCCCCAGAGCGACAATGGAGAATCAGTCTTTGAATAGACACCTGAGGATGACGTGACACTGTTTTTACCATCTACAAAATGGAACTGGAGATTCACTGCCGAAAACCCATTGGAACTGCCAAAAACTGGAGCAGACAACAGCACTTAATCCATTCAGTGGGACATATTTCTAGTTATTTTGTAGCAAAACAAGATAAAACACTTCAATGCTTCTCAGCTCATCCAaattttgtattcttttttaaaCACCCAACAAATGGTTTATTCCCACTGAAGAGGAAGTGCGGACTTCAACCTATAAAGTAGTCTGTAGTTTACGTCACAGCGATGGCCATCATTTGCTATTAGACAGCAGGAGGACGCTTTAAGAAATGCTAGGTAGTCATAACTCAATGTGGGGTCACATGTGCTCAACCCCATTGCtgttttttcaattcaatttaaatgacactttttcacCCAACATTTTGGTTTGTGCCAATTGTTAGGTTAAAATTGGGTTCAGATACAGgaattgagtttgacacccgtgTTGAGACAACCTAGTATTTTTGTACACTAGATGGTTTAAAAGCTCATTGACATGAACTAGAAGCCACAGAACTGATTTTGTGTTATAGTCTCTTTAAGAATGGTGTGAGGGGGATAGTTTGAGTCTGTGCAATAGTGCTTATATTATACTGAGAACAAAGCCATTAAGTTATTCTGAAGATGCACCTTGCAGTTTCATTTCAAATGGCACTTTACACCAGTATCAAGTcaatatttaaagtaaacatttcaTGCTCATAGAATGTGGTAGAAATCTGTAATGTCAGGATTTTATTCTGTATGACTGAACTGTTACCAAGTATGTTTGAGCAATGGGATGCATCTAGCTAATCAAGTAATGGTTCTTGgggtattttacttttttttgagGGATTAATAAAGTATTTATGAACATTTCTATTTAACTAA
>TCONS_00028861
GAAAGACGGCTGATGGACAGACCGCCAAGTGACTTAACCTTTAGAGATTTAAAGAAAAACTAGCTTTGAGGGAAACTGAAGTACTTTGTCTCTCCGAGGACTTTGCCCTTCAGGAAAAGCAAGCAGAAAGAGCACACTGGGATCCCAAATTGTGAGATTTTTCTGAAGGACTGCTATAGCACACAAAGTTTGGAGATGAGAAGGATACTGTAAGTGCATCGTTATCAGTCGTAATGGCGAGCTCTACTTACATCTGCCTGCTGAGGGCAGCTTTCCTGGTTTGTTTGGTTTACCCTTTAGTCAAAGGAAATTCAGTTGAGGTGTCGGATCCTCATCATCACCAGACAGAGAATCTCACAGGACTTCCAATAGTCACATTTAAGTGGCATCACGTTGAGACCCCGTACTTGGTGGCCCTTTGGGTGTTTGTGGCTGGATTGGCTAAACTATCAGTGATTCAGCTGAACCACAGCATCACCGGTGTGTTTCCGGAAAGCGGTCTTCTCATTATTCTGGGCTTTATTTTGGGAGGAATCGTTGTGGGCGCAGACAAAGCGCAGACTTTCAAACTGCTTCCTTCCACTTTCTTCTATTACCTGCTGCCTCAGATCATCCTGGACGCCAGCTATTTTATGCCCAACAAGCTCTTCTTCAGAAACTTGGGTGCTATTCTTATTTATGCCATCTTTGGGACGTGCTGGAACGCAGCTGCTGTAGGACTCTCTCTGTGGGGCTGCCATGAAGCGGGAGCAATGGGTGACTTGAACATCGGCCTCCTGCAGTTCCTGTTGTTTGGCAGTTTAATCGCTGCTGTGGACCCTGTGGCTGTGATCGCCGTCTTTGAAGAAGTGCATGTGAACGAGGTGCTCTTTATCCTGGTGTTTGGAGAGTCACTGCTCAATGATGGCGTCACAGTGgtGCTTTACAATGTGTTTGATGGTTTCGTTTCTCTTGGAGGCCCAATGATTGACGCCGCAGAGATTTTTAAGGGCATATGTTCGTTTGTCGTGGTGGCATTCGGAGGCTCGTTTGTTGGTGTTGCATTTGCCATCCTGCTGTCCCTGCTGACCAGATGCACCAAACACGTTCAGATCATCGAAGCCGGCTTCGTGTTTTTGGTGGGATACCTGTCCTACCTGACAGCAGAGATGCTCTCACTCTCTGCTATACTTTCaaTCACTTTCTGCGGTGTGTGCTGTCAGAAATACATCAACGCCAACATGGATGAGAGATCAGTCACAACAGTTCGTCACGCCATGAAGATGCTTGCGAATGGCTCAGAAACCATGATCTTCCTGTTTTTGGGCGTTACAGCCATTGACACGGAGATCTGGGTCTGGAATACTGGTTTCATCCTCCTCACCCTCCTCTTCATCTTCATCTACAGGATCATAGGTGTTTTCATGTTCACCTGGATGTTAAATAAGTTCCGATTGGTCCCCGTGGAGCTGATTGACCAGGTGGTGATGAGCTACGGTGGCCTGCGGGGGGCAGTGGCGTACGGTCTGGCAGCAATGCTGGACGAAAGCAGGATCCCGGAGAAAAAGTTGATGATCAGCACCACACTCATTGTGGTGTATTTCACTGTCATCCTTCAGggaATCACAATGAAGCCGTTGGTACAGTGGCTCAAGGTCAAAAGAGCAGCTCATTCTGACTTGAAACTTGTTGAGAAACTGAACAACAGGGCATTTGATCACATACTAGCCGCAGTGGAGGACATTTGCGGACGTATAGGAGATAACTGGTGGACCAGAGGCTGGAACAGGTTTGAGGAGAAGTATATTAGCTGGCTATTGATGAAACCAAAGGCCAGAAAGAACAGAGATTACCTGTTCAACATCTTCCACAAACTCAATCTGGAGGACGCCATGAACTACGTCAGTGAGGGTGAACGGCAAGGCTCTCTGGCCTTTATTCGTAATGACGAAGCTGCCAACGTTGATTTCAAAAAACAGTTCGACTCAGAATTTGCAGATGTGATGCCCGATATAATGGTTGATATGTCAAACTACGATTTTGGAATTGAAAATATTTCAGTAGCCACcattgtGAAAGACACTATTCCCTCTGTATCTCTGGACATTCATGGGCAAGACGGGAAGAATGTGGTCGACGACATCAATGCCCATCGCCTTCTACAGCAGCACCTGTACAGGAGCAGAAAACATCACCATCACAAATACAGTCGCAGTCACTTCAGCATCAACCAGAGTGAAGAGGAGGTGCAGGAGATTTTTCAGAGGACCATGAGGAGCCGCCTGGAGTCCTTCAAATCTGCTAAGATGGGTGTCAACCCTACCAAAAAGATCACTAAGTTCCATAAGAAGGATCCTACAGATAAGATGAATGGACACACAGAGGGCAATGGCTATCTGTATGGAGATGAAGCTGACAGTGGGGTTGGTGCTGATGGTGCTATATCTAGCACTTTCATGAGAGACACGTATAAAATGGGAGCAGGCATAGAGAATCCAGTATTTATGCCAGACATGGACAGCCCAGTTCACAGTCCAGTTCATAGTCCACCATGGCTGCTGGAGACTGAGATGAGCGTCGCTCCTTCCCAGAGGGCTCAGCGGCGTCTGCCCTGGACACCAAACCGCCGTCTCGCACCCATGAGGATCAGCACCTGCTCCACAGACTCCTTCCTGATGGCGGACGTCTCTTCAACACTGGAGGTGCACGAGGAACAGCCCCAGAGCGACAATGGAGAATCAGTCTTTGAATAGACACCTGAGGATGACGTGACACTGTTTTTACCATCTACAAAATGGAACTGGAGATTCACTGCCGAAAACCCATTGGAACTGCCAAAAACTGGAGCAGACAACAGCACTTAATCCATTCAGTGGGACATATTTCTAGTTATTTTGTAGCAAAACAAGATAAAACACTTCAATGCTTCTCAGCTCATCCAaattttgtattcttttttaaaCACCCAACAAATGGTTTATTCCCACTGAAGAGGAAGTGCGGACTTCAACCTATAAAGTAGTCTGTAGTTTACGTCACAGCGATGGCCATCATTTGCTATTAGACAGCAGGAGGACGCTTTAAGAAATGCTAGGTAGTCATAACTCAATGTGGGGTCACATGTGCTCAACCCCATTGCtgttttttcaattcaatttaaatgacactttttcacCCAACATTTTGGTTTGTGCCAATTGTTAGGTTAAAATTGGGTTCAGATACAGGTGTCAAacagttcctggagggcagcagctctgcacagtttagttccaaccctaattaaacacacccaatcaaactaattaagtgcttaggcttgtttgatacctTAAGTTAGGGGAGTTGAAGAAACAGAGCTGGAATTAAACTGTGAagggccctccaggaattgagtttgacacccgtgTTGAGACAAC

Function

symbol description
slc9a3.1 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and brush border membrane. Is expressed in kidney. Human ortholog(s) of this gene implicated in congenital secretory sodium diarrhea 8. Orthologous to human SLC9A3 (solute carrier family 9 member A3).

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0098719 sodium ion import across plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0031526 brush border membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015299 solute molecular_function
GO:0015385 sodium molecular_function
GO:0015386 potassium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-545 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane and brush border membrane. Is expressed in kidney. Human ortholog(s) of this gene implicated in congenital secretory sodium diarrhea 8. Orthologous to human SLC9A3 (solute carrier family 9 member A3).

Ensembl:

ensembl_id ENSDARG00000058498

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028860 False 3645 nonsense_mediated_decay 0.45 18 10692166 10730478
TCONS_00028861 True 3398 mRNA 0.47 17 10692584 10730488

Neighbor

gene id symbol gene type direction distance location
XLOC_014598 olah coding downstream 35370 10649424 ~ 10656796 (-)
XLOC_014597 tekt2 coding downstream 43643 10636369 ~ 10648523 (-)
XLOC_014596 si:dkey-211g8.9 coding downstream 60684 10630679 ~ 10631482 (-)
XLOC_014595 si:dkey-211g8.7 coding downstream 64414 10624644 ~ 10627752 (-)
XLOC_014594 si:dkey-211g8.6 coding downstream 79392 10611788 ~ 10612774 (-)
XLOC_014601 slc9a3.2 coding upstream 7662 10738150 ~ 10771558 (-)
XLOC_014602 si:dkey-3n22.9 coding upstream 75370 10805858 ~ 10810006 (-)
XLOC_014603 NA coding upstream 128634 10859122 ~ 10881508 (-)
XLOC_014604 pip5k1aa coding upstream 161977 10892465 ~ 10915898 (-)
XLOC_014605 ecm1a coding upstream 187114 10917602 ~ 10920577 (-)
XLOC_014711 CR382300.3 misc upstream 8998202 19728690 ~ 19728755 (-)
XLOC_014581 BX950852.2 non-coding downstream 568819 10123233 ~ 10123347 (-)
XLOC_014580 BX950852.1 non-coding downstream 679552 10012498 ~ 10012614 (-)
XLOC_014578 NA non-coding downstream 785227 9904324 ~ 9906939 (-)
XLOC_014572 BX927218.2 non-coding downstream 1008658 9676517 ~ 9683508 (-)
XLOC_014570 NA non-coding downstream 1082654 9594867 ~ 9609512 (-)
XLOC_014611 FP074861.1 non-coding upstream 462761 11193249 ~ 11193363 (-)
XLOC_014612 NA non-coding upstream 489273 11219761 ~ 11227568 (-)
XLOC_014620 CR548625.1 non-coding upstream 995008 11725496 ~ 11725631 (-)
XLOC_014623 FP236813.1 non-coding upstream 1315966 12046454 ~ 12046570 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_03490261_03505373 SLC9A3.1 coding CI01000321 null 3489087 ~ 3505473 (+)