XLOC_014603


Basic Information

Item Value
gene id XLOC_014603
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10859122 ~ 10881508 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028866
gagtgcGTGAGACTTCGCGGGATATCTGTGTTGTGCTTGAAGTGGATaaaagttaattattattttggaaACAGCCACAAAATATATTCCTGGCTTCTCAGCGCTTCTCTCAGATTCACCAGCTTCTGTTGAGCGCGCTCGTGCATCGACGTGAAGTAAGGCTCCAGACGATCCTTCACATCTTCCACGCTCTGTGAAGCACGAGACTGAACCTCCTCAAGGTATGTTGACATTTTTCTATAAATCAAATGAGGGATAAAATATTAGTTTGCatcaaaatatgtttaaatatatagtttGATTATGCTTattaagtagggc
>TCONS_00028865
TCGTGTTCCGAGTTCCCACATTTTACCATAGCTGCATTTAGACTGCTCACTGAGGCTATAACAGAATGATCATGCGATTCAACTGAAGTTTTTCCATCTGTGACCTTTTGAAGATCAAGATGATGTAGCCCATATACAGAAGCAGCCTGGCTTCTCAGCGCTTCTCTCAGATTCACCAGCTTCTGTTGAGCGCGCTCGTGCATCGACGTGAAGTAAGGCTCCAGACGATCCTTCACATCTTCCACGCTCTGTGAAGCACGAGACTGAACCTCCTCAAGGTATGTTGACATTTTTCTATAAATCAAA
>TCONS_00028867
ggaagtgtgtgtgtggtgagtgcGTGAGACTTCGCGGGATATCTGTGTTGTGCTTGAAGTGGATaaaagttaattattattttggaaACAGCCACAAAATATATTGTTGGTGTTATATATGTGGCCTGGCTTCTCAGCGCTTCTCTCAGATTCACCAGCTTCTGTTGAGCGCGCTCGTGCATCGACGTGAAGTAAGGCTCCAGACGATCCTTCACATCTTCCACGCTCTGTGAAGCACGAGACTGAACCTCCTCAAGGTATG
>TCONS_00028868
GGAGAACAGAACTAGAAGATTTCCAAGATGGTGCTGGAAAGTACTATGGTCTGTGTGGACAACAGTGAGTACATGAGGAATGGAGATTTCCTGCCCACCAGGTTACAGGCGCAGCAGGACGCCGTCAACATTGTCTGCCACTCAAAGACCCGCAGCAACCCAGAGAACAATGTGGGCCTTATCACAATGGCCAATAATTGCGAGGTCCTCACCACTTTAACACCAGACACTGGCCGCATCCTTTCAAAGCTCCATGCGGTTCAGCCTCTGGGAAAAATCTCCTTCTGCACTGGCATACGAGTGGCACATCCTGGCTTCTCAGCGCTTCTCTCAGATTCACCAGCTTCTGTTGAGCGCGCTCGTGCATCGACGTGAAGTAAGGCTCCAGACGATCCTTCACATCTTCCACGCTCTGTGAAGCACGAGACTGAACCTCCTCAAGGTA
>TCONS_00028869
CCAATCAGCGACGCTGTCACTTGGAGAACAGAACTAGAAGATTTCCAAGATGGTGCTGGAAAGTACTATGGTCTGTGTGGACAACAGTGAGTACATGAGGAATGGAGATTTCCTGCCCACCAGGTTACAGGCGCAGCAGGACGCCGTCAACATTGTCTGCCACTCAAAGACCCGCAGCAACCCAGAGAACAATGTGGGCCTTATCACAATGGCCAATAATTGCGAGGTCCTCACCACTTTAACACCAGACACTGGCCGCATCCTTTCAAAGCTCCATGCGGTTCAGCCTCTGGGAAAAATCTCCTTCTGCACTGGCATACGAGTGGCACATCTGGCACTGAAGCATAGACAAGGCAAGAACCACAAGATGAGGATTGTCGCTTTTGTGGGCAGCCCAGTAGAGGACAATGAAAAAGATCTGGTGAAGATGGCAAAGAGGTTGAAAAAAGAAAAGGTCAATGTGGATATAATCAATTTCGGAGAAGAGGAGATGAACACAGAGAAACTGACTGCATTTGTCAACACTCTCAATGGAAAAGAGGGCACAGGTTCTCATCTGGTCACTGTGCCTCCTGGGCCGAGTCTTGCTGATGCCCTGCTGTCTTCTCCTATCCTGGCTGGTGAAGGTGGCACCATGATTGGTCTGGGTGCAAGTGACTTTGAGTTTGGGGTGGACCCCAGTGCAGACCCAGAGCTGGCCCTGGCTCTGCGTGTGTCTATGGAGGAACAAAGGCAAAGGCAGGAAGAGGAGGCTCGCAGAGCGGCCGTCCAATCAGCAGCTGAGGCTGGCATTCCCACTACAGCCAGTGATGAATCAGAGGAAGCTCTTTTGAAGATGTCTGCATCTCAGCCTGAGAGTGGTGTAGCTGCACTTCCAGACTTCAGCAGCATGACGGAGGAGGAGCAGATTGCGTATGCCATGCAGATGTCCCTGGCAGGGGGAGAATTTGGAGAATCAATGGATACGGGAGCTCCCATCGACACTGCAGAATCTAAGGAAGAGGATGATTATGATGTGATGCAGGACCCAGAATTCCTGCAAAGTGTCCTGGAGAATCTACCTGGTGTTGACCCCAACAATGAGGCCATCCGCAATGCAATGGGATCTCTGGCCTCTCAGAGTGGTAACAAACCAGAGGGGAAAAAAGATGATGAGAAGAAGAAATAACTGTTTCTGTTTGTGACCGACGCACAAGATATTTGACATGAAATGAGTCAAGAAGCGGCCAGCAGAAGTCCATTAAGATGCGTATGGATTTGCTAAGATATTAAATAGCAGATTACTGCAATGTTGTGTGGTACCTCACAAATTCACACATGGCTTGCTTGCTTCCTCTTTTGCTCTGTTCACAATTGattaaatatttgataaaacCCTGCAAAATTTGATCT
>TCONS_00028870
gtttttggaccattattgtaagttattttgttagataagctatagatttggctaatctaatgtatatgcacaaatatgatattgtatagcttcctattaaaatatattaatttaaaagagagatttttgatgggtgtactaatatatgctgagcactgtatgtgttgTATTTGTTATGAGCATAAAAGCAGGTACCAATTAATAATTGAAAATGGGTAATTGACCACCAAATCAGGATATTGTTACTAACAGATCatttgacactgaagactggggGAATTGCAGATGAAATTCAGCCTTCGGATTTTAGtacaaaaaaaagttgttgttttttaatacaCTGACGTTTCCAATTTTGCATGCCTGCATCTAGCTGGCACTGAAGCATAGACAAGGCAAGAACCACAAGATGAGGATTGTCGCTTTTGTGGGCAGCCCAGTAGAGGACAATGAAAAAGATCTGGTGAAGATGGCAAAGAGGTTGAAAAAAGAAAAGGTCAATGTGGATATAATCAATTTCGGAGAAGAGGAGATGAACACAGAGAAACTGACTGCATTTGTCAACACTCTCAATGGAAAAGAGGGCACAGGTTCTCATCTGGTCACTGTGCCTCCTGGGCCGAGTCTTGCTGATGCCCTGCTGTCTTCTCCTATCCTGGCTGGTGAAGGTGGCACCATGATTGGTCTGGGTGCAAGTGACTTTGAGTTTGGGGTGGACCCCAGTGCAGACCCAGAGCTGGCCCTGG
>TCONS_00028871
GGCGTCTCAGTCCCTAAGCTGTTGGCCAAGCAACCTTAAAGCTGTCTAGTGTGGACAACAGTGAGTACATGAGGAATGGAGATTTCCTGCCCACCAGGTTACAGGCGCAGCAGGACGCCGTCAACATTGTCTGCCACTCAAAGACCCGCAGCAACCCAGAGAACAATGTGGGCCTTATCACAATGGCCAATAATTGCGAGGTCCTCACCACTTTAACACCAGACACTGGCCGCATCCTTTCAAAGCTCCATGCGGTTCAGCCTCTGGGAAAAATCTCCTTCTGCACTGGCATACGAGTGGCACATCTGGCACTGAAGCATAGACAAGGCAAGAACCACAAGATGAGGATTGTCGCTTTTGTGGGCAGCCCAGTAGAGGACAATGAAAAAGATCTGGTGAAGATGGCAAAGAGGTTGAAAAAAGAAAAGGTCAATGTGGATATAATCAATTTCGGAGAAGAGGAGATGAACACAGAGAAACTGACTGCATTTGTCAACACTCTCAATGGAAAAGAGGGCACAGGTTCTCATCTGGTCACTGTGCCTCCTGGGCCGAGTCTTGCTGATGCCCTGCTGTCTTCTCCTATCCTGGCTGGTGAAGGTGGCACCATGATTGGTCTGGGTGCAAGTGACTTTGAGTTTGGGGTGGACCCCAGTGCAGACCCAGAGCTGGCCCTGG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:1905368 peptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040625-104 Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in proteasome assembly and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4).

Ensembl:

ensembl_id ENSDARG00000098513 ENSDARG00000101295 ENSDARG00000104952

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028866 False 321 lncRNA 0.40 2 10859122 10860449
TCONS_00028865 False 306 lncRNA 0.45 3 10859194 10864799
TCONS_00028867 False 262 processed_transcript 0.47 2 10859217 10860466
TCONS_00028868 False 445 mRNA 0.52 4 10859219 10881486
TCONS_00028869 False 1392 mRNA 0.49 10 10871601 10881508
TCONS_00028870 False 746 lncRNA 0.40 3 10875733 10876830
TCONS_00028871 True 678 mRNA 0.51 6 10875733 10881141

Neighbor

gene id symbol gene type direction distance location
XLOC_014602 si:dkey-3n22.9 coding downstream 49116 10805858 ~ 10810006 (-)
XLOC_014601 slc9a3.2 coding downstream 87564 10738150 ~ 10771558 (-)
XLOC_014599 slc9a3.1 coding downstream 128634 10692166 ~ 10730488 (-)
XLOC_014600 BX005424.1 coding downstream 153647 10705459 ~ 10705475 (-)
XLOC_014598 olah coding downstream 202326 10649424 ~ 10656796 (-)
XLOC_014604 pip5k1aa coding upstream 10957 10892465 ~ 10915898 (-)
XLOC_014605 ecm1a coding upstream 36094 10917602 ~ 10920577 (-)
XLOC_014606 LO018584.1 coding upstream 73829 10955337 ~ 10971230 (-)
XLOC_014607 tpm3 coding upstream 103861 10985369 ~ 11031394 (-)
XLOC_014608 arhgef1a coding upstream 158009 11039517 ~ 11106315 (-)
XLOC_014711 CR382300.3 misc upstream 8847182 19728690 ~ 19728755 (-)
XLOC_014581 BX950852.2 non-coding downstream 735775 10123233 ~ 10123347 (-)
XLOC_014580 BX950852.1 non-coding downstream 846508 10012498 ~ 10012614 (-)
XLOC_014578 NA non-coding downstream 952183 9904324 ~ 9906939 (-)
XLOC_014572 BX927218.2 non-coding downstream 1175614 9676517 ~ 9683508 (-)
XLOC_014611 FP074861.1 non-coding upstream 311741 11193249 ~ 11193363 (-)
XLOC_014612 NA non-coding upstream 338253 11219761 ~ 11227568 (-)
XLOC_014620 CR548625.1 non-coding upstream 843988 11725496 ~ 11725631 (-)
XLOC_014623 FP236813.1 non-coding upstream 1164946 12046454 ~ 12046570 (-)
XLOC_014625 CU468682.1 non-coding upstream 1249537 12131045 ~ 12131180 (-)

Expression


Co-expression Network