Fish Transcriptome and Expression Database

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model fish

XLOC_014620 (CR548625.1)

Basic Information

Item	Value
gene id	XLOC_014620
gene name	CR548625.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007130.7
NCBI id	CM002903.2
chromosome length	48449771
location	11725496 ~ 11725631 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028897
CCCTGCCACTTTAGCATTTTAAATTCTGTGTTTATATGAGAGCAGATGTTTtaattactcactgaagctaagtggggttgagcctggttagtacctggatggaagaccacacggaaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084173

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00028897	True	136	rRNA	0.42	1	11725496	11725631

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_014618	kcng2	coding	downstream	178980	11508960 ~ 11546516 (-)
XLOC_014617	hsbp1l1	coding	downstream	294218	11429263 ~ 11431278 (-)
XLOC_014616	sept7a	coding	downstream	299904	11331822 ~ 11425592 (-)
XLOC_014615	eepd1	coding	downstream	410272	11270847 ~ 11315224 (-)
XLOC_014614	irgf3	coding	downstream	476514	11247054 ~ 11248982 (-)
XLOC_014621	cpsf1	coding	upstream	172000	11897631 ~ 11977783 (-)
XLOC_014622	rnf19a	coding	upstream	305201	12030832 ~ 12078583 (-)
XLOC_014623	FP236813.1	coding	upstream	320823	12046454 ~ 12046570 (-)
XLOC_014624	pabpc1b	coding	upstream	396313	12121944 ~ 12145765 (-)
XLOC_014625	CU468682.1	coding	upstream	405414	12131045 ~ 12131180 (-)
XLOC_014711	CR382300.3	misc	upstream	8003059	19728690 ~ 19728755 (-)
XLOC_014612	NA	non-coding	downstream	497928	11219761 ~ 11227568 (-)
XLOC_014611	FP074861.1	non-coding	downstream	532133	11193249 ~ 11193363 (-)
XLOC_014603	NA	non-coding	downstream	843988	10859122 ~ 10881508 (-)
XLOC_014600	BX005424.1	non-coding	downstream	1020021	10705459 ~ 10705475 (-)
XLOC_014581	BX950852.2	non-coding	downstream	1602149	10123233 ~ 10123347 (-)
XLOC_014626	CU468824.1	non-coding	upstream	411105	12136736 ~ 12136871 (-)
XLOC_014632	NA	non-coding	upstream	895295	12620926 ~ 12623962 (-)
XLOC_014634	AL928820.1	non-coding	upstream	907518	12633149 ~ 12633263 (-)

Expression

Co-expression Network