XLOC_014641 (ccn2b)


Basic Information

Item Value
gene id XLOC_014641
gene name ccn2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 13803155 ~ 13808632 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028936
ACAGTCCTGAAGCTTAACCGTGATCACAGACACCAGAGAACCAAAACAAACCCGTGGAGTGTGCTTCTGTTGGAAACTCTTTGAGGAAATGACTGGAACAGCATTCACCAGAGCATGCATCGCTCTCAGCCTGCTTATACACACGGCAATATGCCAGGACTGCTCTCAGCCCTGTGATTGCCCAGACGAGAGCCCATTATGTCCTGTAGGCACCAGTCTAGTGTTAGACGGCTGTAGCTGCTGTAAAGTGTGCGCACGACAGGCAGGAGAGCCCTGCTCATTCCTGGAGCCATGCGACCATCATAAGGGCCTATACTGTGACTATAGTGTGCTCAGTGACACAGAGACAGGCATCTGCATGGCTCAAGAAGGTCAGACGTGCGATCTGGGTGGTGTGATTTATCGCAGTGGTGAGACTTTCCAACCCAGCTGTAAACACCAATGTGTCTGCATGAATGGGGAGATTGGCTGCGTACCAACCTGCGCAACCATCATACGGCTGCCCTCTCCAGACTGCCCCTACCCACGACGTGTCCAGATCCCTGGCAAGTGCTGTGAGGAGTGGGTGTGCGACCAGATCCCACAAGAAGACACCTTCCAGTCAGCTGTGGCTGCATACAGAGAAATTTCCGCTCACGGTCTCCAGCCTGAGAGTGCGAGGGACAACTGCATCGTTCAGACCACTGAATGGAGCGAATGCTCTGCAACCTGTGGCATGGGCGTGTCCTCCCGTGTAACCAATGACAATGAGCAATGCCAGCTGGAACGACAGACCCGCATGTGCATGATCCGCCCCTGCCATGCAGATCTAGAAAAGGACATTAAGAGAGGAAAGAAGTGTGTACGAACCCCAAAAAGCCAGAGTGGGATGCGTTTCGAGTTGTCTGGATGCCAGAGCATCAGGCTGTATAAGCCAAAGTTCTGTGGTGTATGTACAGACGACCGCTGCTGCACGCCTCAATCCACCATCACAGCCGAGGTGGAGTTCCGCTGTCCTGAGGGGGACTCCTTCAGAAAGAAGATGATGTTTATTAAGACCTGCTCCTGTCATCACAATTGCCCCCGCGAAAACGATATCTTCCTTGCTTCAAACTCACGGAGAATGATCGGGGACTATGAAAATGACATGTGAGGAgcgtcaacacacacacacactcacactgacaaTCAAGCACATGTGCACACAAGGCAGCTCCGAGTTTTACTGGACCCTGAAATTCTCACGTCTTGTGAGCATCAAAAAAACTAGAACGTTTGACATGAAGTGGGCACTGATAATGGCCCCCGCAAAACTTTCTTTTCTTCTCTTGTTTATATCTTGTGAAGCTCTGAAGTCATCTGGCTGTTTGACTGGTCATGCTAAAGCGGACCTGAAGCACTGAGAACTTTGTGTTAttaggatagttcactcaaaaatgacaattgtgtCTTCATTTACTCAATCTGAAGTTGTTTCAAACATACAAATGGTTGCCATTAGGGTTTTTTTTTAGGGAACACAATTTCAAAAACAAACCTTGATGAAGCTTTTTACCTATACAGCAATACCAAAAACTCAAAGagcacc
>TCONS_00028937
AGTCCTGAAGCTTAACCGTGATCACAGACACCAGAGAACCAAAACAAACCCGTGGAGTGTGCTTCTGTTGGAAACTCTTTGAGGAAATGACTGGAACAGCATTCACCAGAGCATGCATCGCTCTCAGCCTGCTTATACACACGGCAATATGCCAGGACTGCTCTCAGCCCTGTGATTGCCCAGACGAGAGCCCATTATGTCCTGTAGGCACCAGTCTAGTGTTAGACGGCTGTAGCTGCTGTAAAGTGTGCGCACGACAGGCAGGAGAGCCCTGCTCATTCCTGGAGCCATGCGACCATCATAAGGGCCTATACTGTGACTATAGTGTGCTCAGTGACACAGAGACAGGCATCTGCATGGCTCAAGAAGGTCAGACGTGCGATCTGGGTGGTGTGATTTATCGCAGTGGTGAGACTTTCCAACCCAGCTGTAAACACCAATGTGTCTGCATGAATGGGGAGATTGGCTGCGTACCAACCTGCGCAACCATCATACGGCTGCCCTCTCCAGACTGCCCCTACCCACGACGTGTCCAGATCCCTGGCAAGTGCTGTGAGGAGTGGGTGTGCGACCAGATCCCACAAGAAGACACCTTCCAGTCAGCTGTGGCTGGTAGGTCAATCGCATACAGAGAAATTTCCGCTCACGGTCTCCAGCCTGAGAGTGCGAGGGACAACTGCATCGTTCAGACCACTGAATGGAGCGAATGCTCTGCAACCTGTGGCATGGGCGTGTCCTCCCGTGTAACCAATGACAATGAGCAATGCCAGCTGGAACGACAGACCCGCATGTGCATGATCCGCCCCTGCCATGCAGATCTAGAAAAGGACATTAAGAGAGGAAAGAAGTGTGTACGAACCCCAAAAAGCCAGAGTGGGATGCGTTTCGAGTTGTCTGGATGCCAGAGCATCAGGCTGTATAAGCCAAAGTTCTGTGGTGTATGTACAGACGACCGCTGCTGCACGCCTCAATCCACCATCACAGCCGAGGTGGAGTTCCGCTGTCCTGAGGGGGACTCCTTCAGAAAGAAGATGATGTTTATTAAGACCTGCTCCTGTCATCACAATTGCCCCCGCGAAAACGATATCTTCCTTGCTTCAAACTCACGGAGAATGATCGGGGACTATGAAAATGACATGTGAGGAgcgtcaacacacacacacactcacactgacaaTCAAGCACATGTGCACACAAGGCAGCTCCGAGTTTTACTGGACCCTGAAATTCTCACGTCTTGTGAGCATCAAAAAAACTAGAACGTTTGACATGAAGTGGGCACTGATAATGGCCCCCGCAAAACTTTCTTTTC

Function

symbol description
ccn2b Predicted to enable heparin binding activity and integrin binding activity. Predicted to be involved in cell adhesion; negative regulation of cell death; and signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in axis; head; neural plate; notochord posterior region; and trunk. Orthologous to human CCN2 (cellular communication network factor 2).

GO:

id name namespace
GO:0060548 negative regulation of cell death biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0005178 integrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-82 Predicted to enable heparin binding activity and integrin binding activity. Predicted to be involved in cell adhesion; negative regulation of cell death; and signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in axis; head; neural plate; notochord posterior region; and trunk. Orthologous to human CCN2 (cellular communication network factor 2).

Ensembl:

ensembl_id ENSDARG00000104292

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028936 False 1567 mRNA 0.49 5 13803155 13808632
TCONS_00028937 True 1312 mRNA 0.52 5 13803420 13808630

Neighbor

gene id symbol gene type direction distance location
XLOC_014640 epb41a coding downstream 28653 13639486 ~ 13774502 (-)
XLOC_014639 NA coding downstream 346160 13452858 ~ 13456995 (-)
XLOC_014638 CR450687.1 coding downstream 433002 13364536 ~ 13370153 (-)
XLOC_014637 zfpm2b coding downstream 516417 13193215 ~ 13286738 (-)
XLOC_014636 NA coding downstream 614427 13185953 ~ 13188728 (-)
XLOC_014642 stx12 coding upstream 96436 13905068 ~ 13923104 (-)
XLOC_014643 trnau1apa coding upstream 114968 13923600 ~ 13933204 (-)
XLOC_014644 sh3bgrl3 coding upstream 131118 13939750 ~ 13950231 (-)
XLOC_014645 paqr7a coding upstream 152764 13961396 ~ 13962469 (-)
XLOC_014646 NA coding upstream 253410 14062042 ~ 14066550 (-)
XLOC_014711 CR382300.3 misc upstream 5920058 19728690 ~ 19728755 (-)
XLOC_014634 AL928820.1 non-coding downstream 1169892 12633149 ~ 12633263 (-)
XLOC_014632 NA non-coding downstream 1179193 12620926 ~ 12623962 (-)
XLOC_014657 NA non-coding upstream 2218261 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 non-coding upstream 2218787 16027419 ~ 16027490 (-)
XLOC_014659 CR385068.1 non-coding upstream 2219824 16028456 ~ 16028590 (-)
XLOC_014660 CR385068.3 non-coding upstream 2220676 16029308 ~ 16029443 (-)

Expression


Co-expression Network