XLOC_014654 (serinc2)


Basic Information

Item Value
gene id XLOC_014654
gene name serinc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 15408363 ~ 15420718 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028958
CTGCTTTAGTTTCGGTGTGTTTTCAGACATTATGGGTGCGTGTATGGCCCTGTGTTCGCTGGCGAGCTGCGCGTCGTGTTTGTGCGGCTCTGCTCCGTGTCTTTTATCAGGATGTTGCCCTTCAACATACAACTCCACTGTGACCCGCTTGGCCTTCTCCTTTTTCCTGCTGCTGGGCACTATAGTGTCCATCATCATGATTCTGCCAGGCATGGAGACACAGCTAAAGAAGaTTCCAGGATTTTGTGAAGGAGGCTCTTCTATACCTGGATTTGAAGGGAAGGTGAACTGTGATGTCATTGTTGGCTATAAATCGGTCTATAGAATGTGCTTTGCCATGGCCTGTTTCTTCTTCCTTTTCTCCATCATCATGATCCGTGTGAGAAGCAGCAAGGATCCACGAGCTGCAATTCAAAATGGcttctgGTTTTTCAAGTTCTTGATTCTGGTCGGAATTACAGTGGGAgccttcttcattccagatggaATGTTCAACACAGTGTGGTACTACTTCGGTGTGGTTGGCTCCTTCATCTTCATTCTGATCCAGCTCATTCTGCTGGTCGATTTTGCTCATTCATGGAACCAAAAGTGGGTGGAGAATGCAGAGGATGGGAACAGTAAATGCTGGTATGCAGCCCTACTCAGTTTCACATTGGTGCACTATATCTGTGCCTTTGCTGCAGTTGTGTTGTTCTATATTTTCTACACCCAGCCAGATGACTGCACAGAAAACAAAGTCTTCATCAGTCTTAACCTGATCTTTTGTATCATTGTGTCTGTGGTGGCTATCCTTCCAAAAGTGCAGGAAGCTCAGCCAAGCTCTGGTCTCCTCCAGGCGTCCCTCATCTCTCTCTACACCATGTATCTCACATGGTCTGCCATGAGCAACAACCCCAACCGTAAGTGCAACCCCAGTCTGTTAAGTATAGTCAAAGGCCAATCCGCAGCACCCACTCCTACCAGCACCCCTGGTGTCTTTACACAATGGTGGGATGCCCAGAGCGTTGTGGGTTTGGTCATCTTCCTCCTGTGCACACTGTATGCCagCATTCGTTCCTCAAACAACAGCCAAGTGAATAAGCTCATGCAGACAGAGGAGGTTCAGGGTCTGGCGAGTTCTGATGCCAATGATGCCATCTCTGAGGATGGCGTGAGACGAGCTGTGGATAACGAAGAGGACGGTGTCACATACGGCTACTCTTTCttccatttctctctctttctcgcctCTCTCTACATCATGATGACCCTCACCAACTGGTACCAACCTGAAACTGACTATGCAGCCATGACGACCACTATGCCATCAGTTTGGGTGAAGATTTGTTCCAGTTGGCTGGGATTGGGTCTGTACCTCTGGACTCTTGTTGCTCCACTAGTCCTGACTGACCGGGACTTCAACTGAACACCTGTAAGATACTGCAAACAATCTACCTTTTAAACCAAATCATATGCAGTCACAGAAATTCTTGTTCATCTATAAAATGACTTGAGCTTTCAAACTCAATTCTCGCACACTTAACCTTATGCACACTTTGTTACATAGTTATTCACTTTTAGAAGAGATCCGTAAATGCACTTCAGAAAGCTTCAATTTTGTTAATGCTGCATTAATAAGACTTCTGTTTAaaggtttgttttcttctttCATACTTTGATGTATCATGCATATGTTGAATTTACAAAAGCTGATGTATAAGACAGTTgaactatttctaaatattttttattatcatgtaTATGTGTTTTGTTGCAAAATGCACTACATTTAATCAAATCAAAGTTGAATGTACCGGAAAACAATTGAAAAGTGCCTTATCTGTATTGAGATTTTAATTTGCATAAAGACAGCTTTATTTTAGGAGCCTTATGATAACACTCCTCCTgaacaaaaaagatttttttttttttaatcttttgtatttttctttttactcGTGTAAGTCTGATGATTATTAAA
>TCONS_00028959
TGTATGGCCCTGTGTTCGCTGGCGAGCTGCGCGTCGTGTTTGTGCGGCTCTGCTCCGTGTCTTTTATCAGGATGTTGCCCTTCAACATACAACTCCACTGTGACCCGCTTGGCCTTCTCCTTTTTCCTGCTGCTGGGCACTATAGTGTCCATCATCATGATTCTGCCAGGCATGGAGACACAGCTAAAGAAGaTTCCAGGATTTTGTGAAGGAGGCTCTTCTATACCTGGATTTGAAGGGAAGGTGAACTGTGATGTCATTGTTGGCTATAAATCGGTCTATAGAATGTGCTTTGCCATGGCCTGTTTCTTCTTCCTTTTCTCCATCATCATGATCCGTGTGAGAAGCAGCAAGGATCCACGAGCTGCAATTCAAAATGGcttctgGTTTTTCAAGTTCTTGATTCTGGTCGGAATTACAGTGGGAgccttcttcattccagatggaATGTTCAACACAGTGTGGTACTACTTCGGTGTGGTTGGCTCCTTCATCTTCATTCTGATCCAGCTCATTCTGCTGGTCGATTTTGCTCATTCATGGAACCAAAAGTGGGTGGAGAATGCAGAGGATGGGAACAGTAAATGCTGGTATGCAGTTGTGTTGTTCTATATTTTCTACACCCAGCCAGATGACTGCACAGAAAACAAAGTCTTCATCAGTCTTAACCTGATCTTTTGTATCATTGTGTCTGTGGTGGCTATCCTTCCAAAAGTGCAG

Function

symbol description
serinc2 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in EVL; ectoderm; notochord; peripheral olfactory organ; and pronephric duct. Orthologous to human SERINC2 (serine incorporator 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041111-296 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in EVL; ectoderm; notochord; peripheral olfactory organ; and pronephric duct. Orthologous to human SERINC2 (serine incorporator 2).

Ensembl:

ensembl_id ENSDARG00000056532

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028958 False 1963 mRNA 0.43 10 15408363 15420718
TCONS_00028959 True 720 mRNA 0.46 6 15417372 15420678

Neighbor

gene id symbol gene type direction distance location
XLOC_014653 hivep3a coding downstream 10417 15306968 ~ 15397946 (-)
XLOC_014652 edn2 coding downstream 126367 15276713 ~ 15281996 (-)
XLOC_014651 phactr4a coding downstream 178942 15142527 ~ 15229421 (-)
XLOC_014649 CR394532.2 coding downstream 437550 14903379 ~ 14970813 (-)
XLOC_014650 CR394532.1 coding downstream 440171 14903616 ~ 14968192 (-)
XLOC_014655 ftr55 coding upstream 2339 15423057 ~ 15434813 (-)
XLOC_014656 cited4a coding upstream 430508 15851226 ~ 15855427 (-)
XLOC_014657 NA coding upstream 606175 16026893 ~ 16031105 (-)
XLOC_014658 CR385068.2 coding upstream 606701 16027419 ~ 16027490 (-)
XLOC_014659 CR385068.1 coding upstream 607738 16028456 ~ 16028590 (-)
XLOC_014711 CR382300.3 misc upstream 4307972 19728690 ~ 19728755 (-)
XLOC_014646 NA non-coding downstream 1341813 14062042 ~ 14066550 (-)
XLOC_014639 NA non-coding downstream 1951368 13452858 ~ 13456995 (-)
XLOC_014638 CR450687.1 non-coding downstream 2038210 13364536 ~ 13370153 (-)
XLOC_014636 NA non-coding downstream 2219635 13185953 ~ 13188728 (-)
XLOC_014634 AL928820.1 non-coding downstream 2775100 12633149 ~ 12633263 (-)
XLOC_014660 CR385068.3 non-coding upstream 608590 16029308 ~ 16029443 (-)
XLOC_014661 NA non-coding upstream 615294 16036012 ~ 16044582 (-)

Expression


Co-expression Network