XLOC_014662 (CU633478.1)


Basic Information

Item Value
gene id XLOC_014662
gene name CU633478.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16429638 ~ 16434043 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028965
ATGGCTGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgattctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCACCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGTTGCTCCGCCTCACGGGCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatggggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattggattgggaCCAATATTGCTGAGTATCTTCATCCATTGAATTCAAGAATCTATTGAGTTTCCTCATGTTCTCATCCTTGGAGACCACTACTTCTTTCAAGCCTTTGCTCACGTGCTGTGCTATTTATTATTGCAAAGTACATTACTTGCCAAAGTGGACGTTTGCTATAAAGCATTCTACATCTTTGGTGTGAACTACCCCAAGCAGTGTTCCCTGGTGTGGCAGACTGTGGTTTATGGACATCCTGGGGAGGAGACACTAGCATTAAGGGTTCTGCTAGCATTAatttttgctgacaaacagtAATCATTAATACTGTGACCTCACTGCTTCCTTGGATTCTGTGTTCTTTATCTTgtactttggattgtggggaaaaggagcacccagagaaaacccacacgaacacggggaaaacatgcaaaacatgctccacacagaaacaccaactgacccagctgaggcttaaaccaccgaccttgttgctgtgaggcaatcgtactacccactgtgccaccatgacacccatttctaaagaatagttttaataactcatttctaataactgatttcttttctctttgctatgatgacggcacataataatggactagatattttttaagacactctacactgcagttacattgcaactaatttttcttacagactcttttatatctcaggattgatgtttgcacatgattgttcgagtaaaagttaaaaaaagttttcctatttcaaatttgttttaaaatgcttccatcctcaggtttcattttaacttttatatctgttttttcttcaaaactgcatttacattgaacttgatcatccttactgatgattgctttatatctcatatattgatgtttgcacataattgttaaagggaaagttataaaatgttttcttattttttcttaatataaaatttgtattttcttagtttttattgtttgttttgttttttcaagctgtttgatgccttttcatgattactttcacatatttttttctgcattgcagttgatgatttatatgagaatatgttgatgtttgtgctcaaattactttctgacttcagtcatttagatgcattttcattattacttccttatactattgtttttctctactctgcaataacattgcaattgccttactgatgattcctgatttataaatgatgcaaatgtttttgaatgtatttcaaatatgcattttcttaaggtaatttgtctgatttcagtctgatgcattgttactgaactttagtcagtgtttctgtgatacagtttgataaattttcacagaaatcgtcttaaccctttaa
>TCONS_00028966
TAGGATAATTTAGgagctttttattgtaataaaatgtcttttgaatgacacagatttttatgttggctaggtgatgacaatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGggtggcatggggggcgcagtgggtagtgctgtcgcctcacagcaagatggtcgctggtttgagccttggatgggtttcccctccacagtccaatgacatgcggtgtagctgaattgg
>TCONS_00028967
tttgactcagtccctttattaatctggggtcgccacagcggaatgaaccgccaacttatccagcatattttttacacagcggattcatgcagcatacattgactttgccagtgtggactttttttctgcaactagtgggtagcacattcgcctcatagcaacaaggtcacttgatcgatccttggctgggtcaataggcctttctgtgtggagtttgcatgttctccccgtgttcgcgtgggtttcctccaggtgccccggtttccaaagacatgtggtaaagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGG
>TCONS_00028968
ctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGG
>TCONS_00028969
GCTCGAAAAGTATAAGGTAACTAATGAAACTAACGTGAAGCATGTTTGATGACCACCTTATAAACACAACACCTAGGATAATTTAGgagctttttattgtaataaaatgtcttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacgtTACTGTGATTTGTGATCTTTCTGGGGTGTAAGTAAGTAatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGG
>TCONS_00028970
cCTGATGGCTGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgattctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCACCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGTTGCTCCGCCTCACGGGCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgtTACTGTGATTTGTGATCTTTCTGGGGTGTAAGTAAGTAatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGG
>TCONS_00028971
GTGAGAAACCGCCATTTTCTTTGCGCTGTCTTTGAGGGGAAGCGAGTGAAATTCTGTGTGAGACGTAAGTTATTTAgtgtgtatttaacaattttcataagaaataacacacttagtttacttagtataatatacacgcgctttttttctgtttctccgcCTGATGGCTGACTTGTTGCTCCGCCTCACGCTGACCTGTGCTCGCCTTATGGCTGAACTGTTGCTCCGAGTCCGCCTGACGAGCCACCTGTTTCTCCGGatctgtttctccgcctaacggcgacctgtttctccggacctgtttctccggacctgattctccgcctaacggcgacctgtttctccggacctgtttctccgcctaacgcCCGAGCTGTTGCTCCACCTAACGCCTGACCTGTGCTCGCCTCACGCCCGACCTGTTGCTCCGCCTCACGGGCAGCCTGTTGATCGGTGGACGGGTAAGCGCGCATGGCATCGGAAGGAGCTCGAAAAGTATAAGgtgatgacagtaagtaacgtTACTGTGATTTGTGATCTTTCTGGGGTGTAAGTAAGTAatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTTCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001707 mesoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001757 somite specification biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009880 embryonic pattern specification biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0007379 segment specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096247

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028965 False 1910 lncRNA 0.40 5 16429638 16433880
TCONS_00028966 False 316 lncRNA 0.43 4 16431740 16433484
TCONS_00028967 False 332 lncRNA 0.47 2 16431966 16432672
TCONS_00028968 False 138 lncRNA 0.36 2 16431966 16432907
TCONS_00028969 False 322 lncRNA 0.35 3 16431966 16433557
TCONS_00028970 False 517 lncRNA 0.52 4 16431966 16433884
TCONS_00028971 True 681 lncRNA 0.49 4 16431966 16434043

Neighbor

gene id symbol gene type direction distance location
XLOC_014661 NA coding downstream 385056 16036012 ~ 16044582 (-)
XLOC_014657 NA coding downstream 398533 16026893 ~ 16031105 (-)
XLOC_014660 CR385068.3 coding downstream 400195 16029308 ~ 16029443 (-)
XLOC_014659 CR385068.1 coding downstream 401048 16028456 ~ 16028590 (-)
XLOC_014658 CR385068.2 coding downstream 402148 16027419 ~ 16027490 (-)
XLOC_014663 NA coding upstream 325331 16759374 ~ 16765817 (-)
XLOC_014664 CR318590.1 coding upstream 565584 16999627 ~ 16999742 (-)
XLOC_014665 NA coding upstream 675550 17109593 ~ 17113603 (-)
XLOC_014666 NA coding upstream 766632 17200675 ~ 17201052 (-)
XLOC_014667 stmn1a coding upstream 771100 17205143 ~ 17210928 (-)
XLOC_014711 CR382300.3 misc upstream 3294647 19728690 ~ 19728755 (-)
XLOC_014668 NA non-coding upstream 790603 17224646 ~ 17231020 (-)

Expression


Co-expression Network