XLOC_014669


Basic Information

Item Value
gene id XLOC_014669
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 17275458 ~ 17277807 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030189
TTTGTATATTGGTTATGCAACACTTCTGTTGAAGTGCATTTATGCTTTGAATGTTGCTTTGTGAGGGGCTGGCATTCATGTTGTGATCGCTACACTAAAAATCATTCATTATACTTGACAACACTGTCCTATAATTGTTGTGCATGCTACAATATTAAAGCTAgcttaacaaaactcaaacaaGCAACAAAACTTAACAAAACGTTAGTTCATCTGTAACATTCTACAATGCTGATATGGTACTGCCCCTCAAAAAAGATGGTCAAAATCacgttttattaattcattcattaattttcttctcagcttagtccctttattaatcagtggttacCACAGCGAATGAAACGCCATCTTATTCAGCACATGCTTTTTcacagagcggatgcccttccagctgcaacccattacggGGAAACACtcttattcaaacacatacactacagacaatttagcttacccaattcacttatagcacatgtctttggacttggggggggaaaccagagcacacagaggaaaccccacaaactccacacagaaatgtcaactgatttgagttgaagctcgaaccaacgaccttcttttATTGAGGCGACAActctactcactgcgccaccgcgctgcCCGAATCACATCTTATGTTCTTAGTAAAACACACATTGCAcaagaatgtttattttactatttattttttacagaaatCCATTTTGTTCAGTCTGTTAATGTCCGTATTACAGCCTTATGACAAAAAAGTTGTTTAGTCATTTAATATTTACCGTAAATTACAATATGCATATTTAGCatttacagaacaaaacagaCCCAGCCAATATCCAAACAAACCATCTCCACAACCAACATTTTATATTGCATCCAAACCACATTAATAGTAAGGTACAGTTTAAAAATATGGAGGCTGCATTGTCAATGCTAGCAAGAGGTCAGATTCACAGATTGAATGTCTATAACGTTAAAGGAGTAGCTATATCTGAAAACTatatgcttttcttttctttttttctgtggaaTACAAAAGGAGAAACTGCGCAAACTTTATTCTATTCTTATCTATATAATTCTAACATGAACCATCAGGATAATTTATCCAGGGTTTGAAGTCATTTTCTCATTCCCATTTGGATTCTTGGACTGGTTATGATGCTCCAtatttgacatgtactgtacataaattaatgtttattcattaaacaTATAAAGTGTGTAGGGTAAAAAAGTAAACCatcctttaaaataaatgaataaataactattataataataacaatctcgacaacactttattttaatggtccatttgagtattagtagactgtcagcTTAATATATGTCgatactgctctttcaacagacatttaactgactataaaaactttgcaagtgcatgtcaactaacacaaaccctaaccccaactcCAATCTAACAATcttcttataatctaatgagaattagttgcaatggagctttaattcaacaaatggaccatcaaagtaAAGTCTGACCAAAATCTCCTTTTGCGTTCCACAAAATAAATAACCTGCAATCAGATTTGTAATGTCAAGCGGGTGAGAAAATGATCACAGAATTGGGTCCCTCCTTATAAGGTGACCTTAACTACTATGCACTTACATCAATATTAATACAATGTACCTACTGTTTTCATAATGCATTTCTGGTGCTCTTGATGTGGTATACGATGAGGTTAGGGACAGGTTAGGTTtatatgggtaggtttaaggtgtAACTGATGGTCAACATtacaaaaaattacataaattaattacatccaggtatttaatcaatcataagtacaatgtaaaaacatgtatttatacaataagtacattgtagaaaattattaatttcagtgtaggtacatattagttaagaccACATAACAACAAAGTGGGACCCAGAATTGAAATTTTTGGGTAAAGTTGAATTGAAATCTCTGCAAGAAAAACAGCGAAAAGTGAGAAAAATAAGATTGTAAATTAGCTGCCTTTGAAAAAAGGTGTTGTGCAAACAGTCTCAATGCATAACTGAACAATGTTTATGCTTCCACCCAAAGTTTTAAATGTAACACgagtgaaattaaatattaaataaatacattgtaaacaAAGCATCCATTCCATTCCCTGTGTTCAagaaaataaaatttgcatttcagaaaaacaatattttat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030189 True 2211 lncRNA 0.34 2 17275458 17277807

Neighbor

gene id symbol gene type direction distance location
XLOC_014668 NA coding downstream 44438 17224646 ~ 17231020 (-)
XLOC_014667 stmn1a coding downstream 64530 17205143 ~ 17210928 (-)
XLOC_014666 NA coding downstream 74406 17200675 ~ 17201052 (-)
XLOC_014665 NA coding downstream 161855 17109593 ~ 17113603 (-)
XLOC_014664 CR318590.1 coding downstream 275716 16999627 ~ 16999742 (-)
XLOC_014670 sf3a3 coding upstream 10722 17288529 ~ 17304995 (-)
XLOC_014671 NA coding upstream 43735 17321542 ~ 17321880 (-)
XLOC_014672 NA coding upstream 44193 17322000 ~ 17329053 (-)
XLOC_014673 NA coding upstream 75837 17353644 ~ 17354733 (-)
XLOC_014674 nkiras1 coding upstream 99539 17377346 ~ 17385548 (-)
XLOC_014711 CR382300.3 misc upstream 2450883 19728690 ~ 19728755 (-)
XLOC_014663 NA non-coding downstream 509641 16759374 ~ 16765817 (-)
XLOC_014677 CR391921.1 non-coding upstream 556397 17834204 ~ 17996336 (-)
XLOC_014680 NA non-coding upstream 859907 18137714 ~ 18139894 (-)

Expression


Co-expression Network