XLOC_014674 (nkiras1)


Basic Information

Item Value
gene id XLOC_014674
gene name nkiras1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 17377346 ~ 17385548 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028981
AGTGCGTATTTCCGGTTCCTAGTGTTGCGGGCATTCGGGAAATGTAGTGTACATACGGAATTCATTTTAACCCAGCTCTTAGATCAAATGTTTAACTTTGTAAGCGTTCTTATTATACAGTTGTTTTACCTCAAATACTAAATAATATGATTTGCCTCCACGTTCACTTATCAGCAACAATTCCGACTAAAGAGCAAAAAGGCGAGCAATCGATTACCGGAAGCTATATATACAACACCACTGGCACAGAGCGATGACATTAGAAATCTTGTGTTGACGTTCGTGTGATCTATCTATCATTGACCGATTTGGTCGATTAGATTGATGTACATTGTCTGTCTATCCGCGTAAGGTCACTATGGGCAAGGGCTGCAAGGTTGTGGTTTGTGGTATGGCATCTGTGGGGAAAACAGCCATCCTGGAGCAATTACTATATGGGAGTCATACTGTAGGTGCAGAAACGAGTGACACTCAGGAGGATATTTATGTGGCCTCTGTTGAGACAGACCGTGGAGTGAGAGAGCAGTTACGCCTTTACGACACAAGAGGGCTGCGCGAGGGTCTTGATTTACCCAAACACTTCTTCTCAGTGGCTGACGGTTTCGTGCTGGTCTACAGTGTAGACTGTCTTGAGTCATTCAAAAAAGTGGAGGTCTTGAAGAAGGAGATTGACAGGTCCAGAGATAAAAAAGAGGTGATGGTGATGGTATTGGGGAACAAGTGTGAGCTGCGGGAGCGTCGGCAGGTGGATCAGGATACGGCCCAGCAGTGGGCACGTGGGGAGAAAGTCAAACTCTGGGAGGTGACCGTGACAGACAGAAGCACTTTAATCGAACCCTTCACCAGCCTCACTAGCCGCCTGACGCAGCCTCAAAGCAAGTCTGCCTTCCCTCTGCCGGGCCGCAAGAGCAAAGGAACCCCATCTAATGACATCTGAACACCACACCAGAAGACTTGCACTGTATTTGAGTGTCTGGGTTTCTTCCAGACTTCTAAGAAAAAGCTAAACTAGGAGTAGATCTactgtagtcaacatttgaagagaATCAAAAAGGGCAAGAATGGGtgctgttcaatagttttagcACAACTTTGAGGAAATCCATTtccatttcaaatgttgactgtGCTTAGTGGTGGAACACAAAAAGGTAGAATATACAGTGGATTAGTTTGCTTGGCTCactaattaattacattattcTTAATAAATTGGCTTCCTTTATGTGAAAGATCGTTTATACTTAAATTATTTGTGGATAAAATTTAACCTGGACATTAAAGTCAACAGTTCTAAGCATCTTTACATAATGGAAAATACAGAATGAAaccaattgttttgtttgttccaTATCCAATAGATAAGAACATCAACTGCACCCAAGCAGGAATTGTACATCACTCTTAGTTAGGATATGCAAACATTGTGCTTTTGCCTAAATAAGTGTCCTCCGGTTAtttagttttcagtttttttctttttggagttTCAATGTGAACACTACATGCACTGTTTGTTCTGAAGAAAGTCCACAAGTATGAATATTTTATTCACACATATGATTTCAAGCACAAAACTAGATATACCTCTCGCTGTGGATTATTTGTGGCAGCATCATTTCAAATGTTTTCCGGTTATTATAAATGGACCTTCTTCAAAGTGCACTACACGATTTAAAATGTAGTCATGAACGTAAAAAGGTGAATGCAAAGTATGAATTTTAAAGCTT

Function

symbol description
nkiras1 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cytoplasm. Orthologous to human NKIRAS1 (NFKB inhibitor interacting Ras like 1).

GO:

id name namespace
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-215 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cytoplasm. Orthologous to human NKIRAS1 (NFKB inhibitor interacting Ras like 1).

Ensembl:

ensembl_id ENSDARG00000099527

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028981 True 1730 mRNA 0.41 4 17377346 17385548

Neighbor

gene id symbol gene type direction distance location
XLOC_014673 NA coding downstream 22613 17353644 ~ 17354733 (-)
XLOC_014672 NA coding downstream 48293 17322000 ~ 17329053 (-)
XLOC_014671 NA coding downstream 55466 17321542 ~ 17321880 (-)
XLOC_014670 sf3a3 coding downstream 72351 17288529 ~ 17304995 (-)
XLOC_014669 NA coding downstream 99539 17275458 ~ 17277807 (-)
XLOC_014675 thrb coding upstream 129083 17514631 ~ 17658253 (-)
XLOC_014676 top2b coding upstream 302802 17688350 ~ 17774884 (-)
XLOC_014677 CR391921.1 coding upstream 448656 17834204 ~ 17996336 (-)
XLOC_014678 snx10a coding upstream 732773 18118321 ~ 18130567 (-)
XLOC_014679 cbx3a coding upstream 745964 18131512 ~ 18136410 (-)
XLOC_014711 CR382300.3 misc upstream 2343142 19728690 ~ 19728755 (-)
XLOC_014668 NA non-coding downstream 146326 17224646 ~ 17231020 (-)
XLOC_014680 NA non-coding upstream 752166 18137714 ~ 18139894 (-)
XLOC_014683 BX649471.3 non-coding upstream 928780 18314328 ~ 18315321 (-)
XLOC_014684 BX649471.2 non-coding upstream 977769 18363317 ~ 18364965 (-)
XLOC_014687 BX927404.1 non-coding upstream 1099158 18484706 ~ 18485881 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000320_03639518_03642111 NKIRAS1 coding CI01000320 null 3639395 ~ 3642111 (-)