XLOC_014679 (cbx3a)


Basic Information

Item Value
gene id XLOC_014679
gene name cbx3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18131512 ~ 18136410 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00029006
CTGTAGTGCCAGGCTGGAGCTCAGGATTTGCCTAGTCTGACACCATGAATAGTGCAAAATGCTTTATCAAGGAAAATTTCCCATGGAAAAATTCCAGTGGACCTAAATCCAGAAGTGATGTTGCGAAGTGTCACTGCTCGTTTGAAGGCCTCGTTCACAAGTCCTACAATCTGGTAGACTAAATTTAACTTGTGCCTAATGTCTCACTTTACCCCACTGCCAcattttagaaatttttttttttttttttagcaattcaGACTAATCTTGAGCTAGCATACTCACATCGTTTTATATGTTGGTAGTTCATGCTTTCCAAAGCACCAGGAATTCCTATTATTCATGGTAAAGGAGATATGGAAGGGGCTttaaaacaaaattgttataGAGTGATATATAAAATTCGTTGCCTAGATACAGGGGGTATCTCACATTACCCCGTTCTCCCTTTGTTGTGTCATGTTCTGGATGTAGTAGGCAATAGGCTAAACATATAGAGAATCTGTTTTAGAGATCTGTTTAATGAGTGAACACTTAAATTGAAGTTAAGTGATACGGTGTATCTCTCAAAATAACTGAATCGAGATGTTTTGCCATGGTAATCTGCGGATGTGCTTTTGAATTCACAGGCGCTCCGCCCAACGTAAGACTCATTGGATACACGTGATTGCTCTCAGATAGGCGTGGCTTTACGTCCTCGCGTTCGATTCTGGCTGGCCTTCGTCGAGCCTCAGTCGGCTTTTCTTCTTGATTTATTAGTATCAAGTaagtaaaacttttaaaagtgcgTACTTCGTTGGCGCGGGAGCAGTTTCTGTAAAGCCATTTGCAGTTCAGAAGGCGTGAAGATTTGTTATCCAAGTTTTTATCTTATCCATTGTCATGgTCAACATGGGTAAGAAGCAGGCAGGCAAGTCAAAGAAGGAAGTTCAGGAGATTGAGGAGTTTGTGGTGGAGAAGGTAATGGACCAGCGAGTGGTCAATGGAAAAGTTGAGTTTTTCCTCAAGTGGAAAGGCTTTACAGATGCTGACAACACTTGGGAGCCTGAAGAAAATTTAGACTGTCCAGAGCTGATCGCCGCATTCCTTGAGTCTCAGAAAGGAGTGGTGGAAAAACCAGAAGCTGTAAAAAGAAAATCATCCACTGATGAACCAGAGACAGAAGAGAGCAAGGCAAAACGAAAGAAGGAAATGtCTGACAAGCCTAGGGGTTTTGCAAGAAACCTTGAACCAGAGAGAATCATTGGGGCGACTGACAGCAGCGGGGAGCTCATGTTCCTCATGAAGTGgAAGGACTCTGATGAAGCGGACCTGGTTCCCGCACGAGAGGCTAACACCCGTTGCCCGCAGATAGTTATTGCTTTTTATGAAGAAAGGCTAACTTGGCATTCTTGTCCTGAGGATGAGCAGCAATAGCATCCCACATTTCATTACAACTTTCTGTGTTGGTGTCTTCCACCTGTGCTGTGTTGATAGCCTGTCAGTGGAggattctttttgttttgttttttcagtttattgaAGATTTGTCTGGAAACTATGTGCATGACAGTAGTCAACCAATGAACGTATGTACAAATGAGATGAGTGTTTTTAAAGTTACAATAGAGGACGCTTAAAGTGTTTATTTGAATTAGGTGTCTCCGCGGTGCCGTTCATCATTAATGCACTGGCTTGTTTTTTGCTCATTCTtgtcatccaaaaaaaaaatcccaaacttGCTTTCACGTTTATAGTTTTCTTTGGTGGATTATACGATCTATtgtagtagtgttttttttttttttttttttttaattgttatttcttACATGAATGTTGGAAGTGTCTATGTAAATGTTTGTGTAAATAATTCCTATTTTTTAGTTCAATAAAGGTTTATATGCCTGCTTTTAATCTGTGTGTCTTAAATATCTCAAGCAGATTTCTTTGTGCAATATACCTCAAACCATGGTGGTTTGAGGGCTTTAAAAGTATATTTTGGGTAGCTGTGTGCATGCTATTTTTTTCCCCTGTTATATTGAGCTATTTTCAATGTCAAAACTAGTTTGGTGGTATGTCTTGTTTTTGATTATTAACCACgtcaaaattaacattttgtaCAGACATCTAATAGGCGGATCAGTGTTTATTGAATGAGggaaaatgtttcaaataatctGCTATTATACAATATGCCAgagtttgtgtatttatacaaCTATTATTTTCTATTCGGTTTTAATTTGCTCTTTTTGTGGTTGTTGTCCTCTACATTGCAGTAGCTGTTAGTCATCAATAATGAAATTATGAATTTTATGAGGGAATTTTAAATTTTGAGAGTCTCAAGCAAAACCATGTGTTGCCATTTtccttgtttacattttttgcttttttcaaaaccgaatgttttttttttcctcagtcaTCTGAAGCTAAAGGAAGTGCATAATCTCCCACATTTGGAAATCAGCATGACAGCTGGttcataaatgtttaattttactaACCAGATGAGTTATAAATGTTCTAGAGTTGGGATGATAAATTTTCACAAATTTTTGTTCCAAGATTTCTCTAAGAGTCAGTCACAACTGATAAAATGCTGTCTTTGTCATTTGCTCTTAGATCTGTTTCCTGCATAtctaaaacacacacaggcaGTTAACAAAGGGAAAAATGACCAATAATATTACGTTCATGTTCTGCACATTCTGACATGTGatgtagatttgtttttatttgcaaaatGCATTTCAATACAAAGTGCATAGCAGCCAAATTTCATTAGAagcttaaatgtttttaatctAG
>TCONS_00029007
GCTTTACGTCCTCGCGTTCGATTCTGGCTGGCCTTCGTCGAGCCTCAGTCGGCTTTTCTTCTTGATTTATTAGTATCAAgTCAACATGGGTAAGAAGCAGGCAGGCAAGTCAAAGAAGGAAGTTCAGGAGATTGAGGAGTTTGTGGTGGAGAAGGTAATGGACCAGCGAGTGGTCAATGGAAAAGTTGAGTTTTTCCTCAAGTGGAAAGGCTTTACAGATGCTGACAACACTTGGGAGCCTGAAGAAAATTTAGACTGTCCAGAGCTGATCGCCGCATTCCTTGAGTCTCAGAAAGGAGTGGTGGAAAAACCAGAAGCTGTAAAAAGAAAATCATCCACTGATGAACCAGAGACAGAAGAGAGCAAGGCAAAACGAAAGAAGGAAATGtCTGACAAGCCTAGGGGTTTTGCAAGAAACCTTGAACCAGAGAGAATCATTGGGGCGACTGACAGCAGCGGGGAGCTCATGTTCCTCATGAAGTGgAAGGACTCTGATGAAGCGGACCTGGTTCCCGCACGAGAGGCTAACACCCGTTGCCCGCAGATAGTTATTGCTTTTTATGAAGAAAGGCTAACTTGGCATTCTTGTCCTGAGGATGAGCAGCAATAGCATCCCACATTTCATTACAACTTTCTGTGTTGGTGTCTTCCACCTGTGCTGTGTTGATAGCCTGTCAGTGGAggattctttttgttttgttttttcagtttattgaAGATTTGTCTGGAAACTATGTGCATGACAGTAGTCAACCAATGAACGTATGTACAAATGAGATGAGTGTTTTTAAAGTTACAATAGAGGACGCTTAAAGTGTTTATTTGAATTAGGTGTCTCCGCGGTGCCGTTCATCATTAATGCACTGGCTTGTTTTTTGCTCATTCTtgtcatcc

Function

symbol description
cbx3a Predicted to be located in nucleus. Is expressed in ovary and testis. Orthologous to human CBX3 (chromobox 3).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1158 Predicted to be located in nucleus. Is expressed in ovary and testis. Orthologous to human CBX3 (chromobox 3).

Ensembl:

ensembl_id ENSDARG00000003860

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00029006 False 2793 mRNA 0.38 5 18131512 18136410
TCONS_00029007 True 894 mRNA 0.45 5 18132605 18135724

Neighbor

gene id symbol gene type direction distance location
XLOC_014678 snx10a coding downstream 945 18118321 ~ 18130567 (-)
XLOC_014677 CR391921.1 coding downstream 135176 17834204 ~ 17996336 (-)
XLOC_014676 top2b coding downstream 356628 17688350 ~ 17774884 (-)
XLOC_014675 thrb coding downstream 473259 17514631 ~ 17658253 (-)
XLOC_014674 nkiras1 coding downstream 745964 17377346 ~ 17385548 (-)
XLOC_014680 NA coding upstream 1304 18137714 ~ 18139894 (-)
XLOC_014681 nfe2l3 coding upstream 7183 18143593 ~ 18152942 (-)
XLOC_014682 si:dkey-208k4.2 coding upstream 173976 18310386 ~ 18313381 (-)
XLOC_014683 BX649471.3 coding upstream 177918 18314328 ~ 18315321 (-)
XLOC_014684 BX649471.2 coding upstream 226907 18363317 ~ 18364965 (-)
XLOC_014711 CR382300.3 misc upstream 1592280 19728690 ~ 19728755 (-)
XLOC_014673 NA non-coding downstream 776779 17353644 ~ 17354733 (-)
XLOC_014672 NA non-coding downstream 802459 17322000 ~ 17329053 (-)
XLOC_014671 NA non-coding downstream 809632 17321542 ~ 17321880 (-)
XLOC_014669 NA non-coding downstream 853705 17275458 ~ 17277807 (-)
XLOC_014687 BX927404.1 non-coding upstream 348296 18484706 ~ 18485881 (-)
XLOC_014688 FP085400.1 non-coding upstream 460376 18596786 ~ 18597326 (-)

Expression


Co-expression Network