XLOC_014680


Basic Information

Item Value
gene id XLOC_014680
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18137714 ~ 18139894 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030193
aaccagcaagtgtgtaactTATCAGgaaaatgactgactgaatggatGACTGTCTAGGTTGCAAGCGGGACATACATGTTACAGTTAAGTATTTCAGCTACAACATATTGTTAAATCACAGTAACCATCTTGCCATTAGTTGTaacttcacagtaaaatatagttaattctacaagagaATACGGTGAAATCACAGAAATGAGCCTTACTATACACCTTGAAGTCACATAtggctgtaatttcactgtaagtaagtgtaaaacaaatcacagtggcttactgtgaaagtaatacAGTTATTAGTCAGTAATTTACTGTTAATGAAGGggcaaatattttacaatgtataagtAAAACTCATGTATACATTTTGTCTGTCATTCTGTTTTTTAAGGTGAGTGCTGAATTTGAGAGAGATGCCACTGTGCATTGTGGATCTTCACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGTTGGACAATGAAGAACCGACAGGATCTGAACGGCTTGTGATGGCAGAAATGTTGACGTAAACAGGGACCTTCTACAAGTGACCGCCTGAAGATActggcatcatcatcatcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTCAGGCAAACTCTGCTTTCACTCCGCCCAAAGCCCCAGCTGAACGGTTTTGGCCCAGTGTATCCGATCAGGCCCGGGAAGTGACTGTGGAAACTTGACTGGCCCTGGCTCGCATTGGCACGACTCTTGACTACATTCCCAGAGCTTTTGTCCACCTGGGTTTGACCTATGCATTTTAACTGTGACAAAGAATGGTGTTTTTACAATAGACTGTCTGGTTAACGCTGGAAGATATTAGAGGGTAGTATTCCCTCTACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCTATTGTGAGATTGTTGTTACTCTGTATTGTGGCTTCACACTGCTGAACAGGCTCCACTAATTTGagctaaatttaattaaattttactcaATCCATACttgtttactttaattaatattattgcttGTAATCTGTTGCCAAAATTTTATTGTGTAGATATAAAGCATTATTTTCTAGAGCTGATGACCAGGCTCCACactttttatgttaaatctaaataaaaacattaagtaGTTTTCATTAACATTGTGTAGGTTTTTCtgttcaatttaataaatatttttgtttcaaatTAGCTAATTTCTTTAAGTAATTTTTGCTtacttaatttaaatgaataattttaaatcagtaattttaattaattgttactcAATCCATAtatgttgaatttaattaataatattgcttgtaatctgttG
>TCONS_00029772
CGCTTCACCAGACAACGTGTAGATGTCGCGGTCTCATCGGATTTATCGCACAGCATTGAGTTAAAGTGACCACAGAATAAAGTAAGCAAGGTGAGTGCTGAATTTGAGAGAGATGCCACTGTGCATTGTGGATCTTCACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGTTGGACAATGAAGAACCGACAGGATCTGAACGGCTTGTGATGGCAGAAATGTTGACGTAAACAGGGACCTTCTACAAGTGACCGCCTGAAGATActggcatcatcatcatcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTCAGGCAAACTCTGCTTTCACTCCGCCCAAAGCCCCAGCTGAACGGTTTTGGCCCAGTGTATCCGATCAGGCCCGGGAAGTGACTGTGGAAACTTGACTGGCCCTGGCTCGCATTGGCACGACTCTTGACTACATTCCCAGAGCTTTTGTCCACCTGGGTTTGACCTATGCATTTTAACTGTGACAAAGAATGGTGTTTTTACAATAGACTGTCTGGTTAACGCTGGAAGATATTAGAGGGTAGTATTCCCTCTACTGTGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCACATAAATTTCACTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCTATTGTGAGATTGTTGTTACTCTGTATTGTGGCTTCACACTGCTGAACAGGCTCCACTAATTTGagctaaatttaattaaattttactcaATCCATACttgtttactttaattaatattattgcttGTAATCTGTTGCCAAAATTTTATTGTGTAGATATAAAGCATTATTTTCTAGAGCTGATGACCAGGCTCCACactttttatgttaaatctaaataaaaacattaagtaGTTTTCATTAACATTGTGTAGGTTTTTCtgttcaatttaataaatatttttgtttcaaatTAGCTAATTTCTTTAAGTAATTTTTGCTtacttaatttaaatgaataattttaaatcagtaattttaattaattgttactcAATCCATAtatgttgaatttaattaataatattgcttgtaatctgttG

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042693 muscle cell fate commitment biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021508 floor plate formation biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030193 False 1560 lncRNA 0.34 2 18137714 18139390
TCONS_00029772 True 1256 lncRNA 0.36 4 18137714 18139894

Neighbor

gene id symbol gene type direction distance location
XLOC_014679 cbx3a coding downstream 1304 18131512 ~ 18136410 (-)
XLOC_014678 snx10a coding downstream 7147 18118321 ~ 18130567 (-)
XLOC_014677 CR391921.1 coding downstream 141378 17834204 ~ 17996336 (-)
XLOC_014676 top2b coding downstream 362830 17688350 ~ 17774884 (-)
XLOC_014675 thrb coding downstream 479461 17514631 ~ 17658253 (-)
XLOC_014681 nfe2l3 coding upstream 3699 18143593 ~ 18152942 (-)
XLOC_014682 si:dkey-208k4.2 coding upstream 170492 18310386 ~ 18313381 (-)
XLOC_014683 BX649471.3 coding upstream 174434 18314328 ~ 18315321 (-)
XLOC_014684 BX649471.2 coding upstream 223423 18363317 ~ 18364965 (-)
XLOC_014685 zgc:112966 coding upstream 277199 18417093 ~ 18418763 (-)
XLOC_014711 CR382300.3 misc upstream 1588796 19728690 ~ 19728755 (-)
XLOC_014673 NA non-coding downstream 782981 17353644 ~ 17354733 (-)
XLOC_014672 NA non-coding downstream 808661 17322000 ~ 17329053 (-)
XLOC_014671 NA non-coding downstream 815834 17321542 ~ 17321880 (-)
XLOC_014669 NA non-coding downstream 859907 17275458 ~ 17277807 (-)
XLOC_014687 BX927404.1 non-coding upstream 344812 18484706 ~ 18485881 (-)
XLOC_014688 FP085400.1 non-coding upstream 456892 18596786 ~ 18597326 (-)
XLOC_014691 NA non-coding upstream 604083 18743977 ~ 18753193 (-)

Expression


Co-expression Network